Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35780 175 / 9e-49 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT2G17700 172 / 9e-48 STY8 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) AT4G38470 171 / 3e-47 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT5G03730 167 / 5e-45 AtCTR1, SIS1, CTR1 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) AT1G14000 159 / 1e-43 VIK VH1-interacting kinase (.1) AT5G11850 160 / 3e-42 Protein kinase superfamily protein (.1) AT1G73660 160 / 4e-42 protein tyrosine kinase family protein (.1) AT4G31170 153 / 9e-42 Protein kinase superfamily protein (.1.2.3.4) AT1G08720 158 / 1e-41 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) AT3G58760 152 / 5e-41 Integrin-linked protein kinase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G179100 [exp] 185 / 3e-53 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 180 / 8e-52 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 180 / 1e-50 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G190200 [exp] 180 / 1e-50 AT4G38470 500 / 2e-172 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 179 / 6e-50 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.002G015400 [exp] 177 / 2e-49 AT4G38470 650 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G246500 [exp] 174 / 1e-48 AT4G38470 645 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 174 / 2e-48 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.002G070000 [exp] 170 / 7e-47 AT4G38470 498 / 1e-171 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025010 [exp] 534 / 0 AT4G35780 178 / 1e-49 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10026461 [exp] 515 / 0 AT4G35780 179 / 7e-51 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10022653 [exp] 184 / 2e-52 AT4G38470 673 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 184 / 9e-52 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10023989 [exp] 176 / 1e-48 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10025092 [exp] 176 / 1e-47 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10018895 [exp] 169 / 1e-46 AT4G35780 508 / 1e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10028590 [exp] 165 / 5e-45 AT4G35780 506 / 9e-175 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Lus10004153 [exp] 168 / 1e-44 AT2G17700 611 / 0.0 serine/threonine/tyrosine kinase 8, ACT-like protein tyrosine kinase family protein (.1) Lus10014368 [exp] 164 / 8e-44 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.006G222600.3 pacid=42768042 polypeptide=Potri.006G222600.3.p locus=Potri.006G222600 ID=Potri.006G222600.3.v4.1 annot-version=v4.1 ATGATTGTTGCAGGTAGTAGCCAGAAGAAGAAGGCCAGCACTCTATTTAGTCCTAGGCAATCTCCGGTCGAGAATTTTCCGGGAAAGAATGAGATTTCTA CCATCAAAACCACTAATTCAGGAGGATGTTGTCGGAGGCTTAACGACTGCATGGGTAAGGGATCTATTGTCTCGACGAAGGAGAGCCAGCAGCAGCAGCA GTCTAGATCCGAGCTGAGGCAGCAGGTGGCAGACCTTGAAAGGGAAGTCCTTAAGCAGAAGGAGCTCCGTATCATGTACAGGAAGAGGATGGAAACTACA CAAGATTATCTAAAATATTGTCTTCAAGTAGCACAAGAAAACGGCTTCTTGGACCTCATAATTCAAAACAAAGATGATCAACAAGGAATAAAAGATGCTC TTCCCACCAATATTGTCAGCCCCAGAATTACCAGTCCTCATCAGCTGCCCACTCAAGTGCCCCAACTTCCAAATCTTGCTTTCACTATCGATCAAGCCAA GATGAATGGATGGTATATTGAATCTCACGAGATCGAATTTCAAGAGAAAATTGGCCAAGGAAGTACTGCAGATATTTATAGAGCAATTTGGCGAGGATTT GATGTTGCAGTGAAGTGCATGTTTCCTGACTTTTTCCTTTCAAATGAAAATGGTGTCAACTTTTTTGCTCAAGAACTTGACACTTTATCTAGACAGCGGC ATTGTTATGTGCTGCAACTATTGGGGGCATGCATTGATCCCCCTAGTAATGCATGGGTAGTGACAGAAATCTTAGGCATGACACTAAAGGAGTGGCTACA TGGACCAGGTAGCAGGCGAAACGAGCGATCGGTTCCAATTCCTCCATTTCAAAACAGGGTTACTGTGGCATTGGAGATTGCTCAAGCAATGCAATATCTC CATGAACAGAAGCCCAAGGTCATTCACCGTGACCTAAAGCCTAGCAATATATTCTTAGACGATTCCAATCACGTCAGGGTGGCAGATTTTGGTCATGCTA GGTTCTTGGATGACGCAGAAATGGCACTCACCGGTGAAACAGGAACATATGTCTATATGGCGCCAGAGGTGATTCGCTGCGAACCTTATAACGAAAAAAG CGACGTTTATAGCTTTGCTGTTATACTTAATGAGCTTATGACTGGGGATTATCCATACATAGAAACAGATTTCGGTCCCAGCAAGATTGCAATGGAAGTT GCCGAAGGAAAGCTGAGGCCTATGCTTCCTCACGAGGACAATGATCAACTTGGCGAGCTCATCGATCTCATTTCTCAATCATGGGATCAAGATGCTTCTG TTAGACCATCCTTTGCCACAATCACTTCTAGTCTCAGAAAAATCCAACAGAGAATCATAGAGGATGCTTAA
AA sequence Show only first row Show all	>Potri.006G222600.3 pacid=42768042 polypeptide=Potri.006G222600.3.p locus=Potri.006G222600 ID=Potri.006G222600.3.v4.1 annot-version=v4.1 MIVAGSSQKKKASTLFSPRQSPVENFPGKNEISTIKTTNSGGCCRRLNDCMGKGSIVSTKESQQQQQSRSELRQQVADLEREVLKQKELRIMYRKRMETT QDYLKYCLQVAQENGFLDLIIQNKDDQQGIKDALPTNIVSPRITSPHQLPTQVPQLPNLAFTIDQAKMNGWYIESHEIEFQEKIGQGSTADIYRAIWRGF DVAVKCMFPDFFLSNENGVNFFAQELDTLSRQRHCYVLQLLGACIDPPSNAWVVTEILGMTLKEWLHGPGSRRNERSVPIPPFQNRVTVALEIAQAMQYL HEQKPKVIHRDLKPSNIFLDDSNHVRVADFGHARFLDDAEMALTGETGTYVYMAPEVIRCEPYNEKSDVYSFAVILNELMTGDYPYIETDFGPSKIAMEV AEGKLRPMLPHEDNDQLGELIDLISQSWDQDASVRPSFATITSSLRKIQQRIIEDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35780		STY17	serine/threonine/tyrosine kina...		Potri.006G222600 [exp]	0	1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.012G115000 [exp]	11.13	0.9908	CYP728F1
AT5G24090		ATCHIA	chitinase A (.1)		Potri.002G242000 [exp]	13.34	0.9765	Pt-CHI3.10
					Potri.005G059400 [exp]	14.28	0.9905
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.016G063900 [exp]	14.56	0.9733
AT2G39518			Uncharacterised protein family...		Potri.012G040100 [exp]	17.60	0.9903
					Potri.002G158700 [exp]	20.78	0.9903
					Potri.007G106900 [exp]	22.97	0.9899
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139200 [exp]	23.62	0.9897
					Potri.019G100100 [exp]	25.88	0.9896
AT3G54040			PAR1 protein (.1)		Potri.009G039900 [exp]	25.90	0.9895

Compare expression of checked genes

Potri.006G222600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.