Plant FIBer expression Database

Potri.006G222700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G54200 114 / 4e-28 unknown protein
AT3G13980 110 / 7e-27 unknown protein
AT5G12050 87 / 2e-18 unknown protein
AT3G42800 54 / 9e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G049900
[exp]
583 / 0 AT1G54200 122 / 5e-31 unknown protein
Potri.001G170500
[exp]
285 / 2e-91 AT1G54200 167 / 2e-47 unknown protein
Potri.003G063400
[exp]
277 / 1e-88 AT1G54200 173 / 7e-50 unknown protein
Potri.006G144700
[exp]
145 / 5e-39 AT3G13980 130 / 2e-34 unknown protein
Potri.018G065000
[exp]
140 / 3e-37 AT3G42800 139 / 1e-37 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025011
[exp]
202 / 5e-60 AT3G13980 115 / 1e-28 unknown protein
Lus10026463
[exp]
196 / 1e-57 AT1G54200 107 / 7e-26 unknown protein
Lus10037659
[exp]
119 / 5e-30 AT3G13980 193 / 9e-59 unknown protein
Lus10008457
[exp]
113 / 1e-27 AT3G13980 151 / 1e-42 unknown protein
Lus10015641
[exp]
77 / 2e-15 AT3G13980 176 / 3e-52 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G222700.1 pacid=42768390 polypeptide=Potri.006G222700.1.p locus=Potri.006G222700 ID=Potri.006G222700.1.v4.1 annot-version=v4.1
ATGTATAGGCGGGAGAAAACAATGAGAGAGGAAAGATACAAGCACGGCATCAAGAACCCATCTTTCTCTTCATCACTTCTTGATGAAATCTATCGTTCTA
TTGATGATGGTGAACCAAAACGTGAAGAGTTGAAGTTCTACAGAGAAACAATGCCAAAGAAACAAAACAAAATTGGCAGGAACATTGGAGGAGAAGCAGG
GATGCCAACTCTTCAACGTGCTTGTTTGATCGAGAAATGGATGGAGCAGAAGGTCACCCAAAAGGTCATCACTCAACAGAGGCGGCAAAACTCAACAGAA
CTTGAGAGAAAAGCACAGCTTGATCATGATCTTGACCAAGATGTCCTGTTTTTTAGCTCAACCTCAACCTCTTCGGATTCTAGCTCTGGTGGGTTCTCAT
CTTCTGACACAGAATCTATGTACGGTGCAAGATCAAGGGCCTCTTCTTTCAATCCACCAAGACCTAAGCCAGTCAGGACAAGCCTGTCCGCTCGGTCAGG
AAAAACAGAGAAAACAGAGAGGACTCTGTTCCATGAACAGAGGGAACTGCGTATGTTTGATGATTATCACTACAGCTCTGCTTCAGAACAGACACCAAGG
CTTGAAGACAACATAATCAAGTCCAAATCAAGAGCCTTAAAGATTTACAGCAATCTAAAGAAGGTGAAACAGCCAATTTCACCAGGTGGGAAGCTGGCGA
ATTTCCTCAATTCCCTCTTCACCACAGGGAACTCAAAGAAATCAAAGAATTCATCTTCCATAGGAAACTTTGATGAAGAAAGGAAACTTAACTCAGGACA
AGCATCGACCTGCTCTTCTGCTTCATCATTTTCAAGATCATGCTTGAGCAAGCATTCGCCATCGACCAGGGAAAAATTACGCAATGGGGTTAAAAGGAGT
GTTAGATTTTACCCTGTGAGTGTAATTGTTGATGAAGATTGCAGGCCAGTCGGCCACAAATCATTATATGAAGAGGAAGAATCAAGTCTCATGTCTGTTT
CTCTGCCAACAGCATGGAAAATAGGGAAATCACCATCAAGAAAAACTGATGATGAGCTGAAGTATCAAGTAATGGAGAAGAGTAGGAGAGTTGAGGAGGT
GGCTAGAGAGTTCTTGAAGGATCACCGTCAAAATCAGAAGAAAAATGATGTTACTATGATTGATGTTCGCGGAAAATATAATGATCGCTATCACGATGAG
GATGAGGATGAGGATGACGATGCTGCAAGCTATTCGAGTTCGGATTTATTCGAGCTTGATCACCTTGCAGTAATTGGAAACGATCGTAGGTATTGTGAAG
AACTTCCCGTGTACGAAACTACTCATCTTGATACTAATCGTGCCATTGCTAATGGCTTGATAGTGTAG
AA sequence
>Potri.006G222700.1 pacid=42768390 polypeptide=Potri.006G222700.1.p locus=Potri.006G222700 ID=Potri.006G222700.1.v4.1 annot-version=v4.1
MYRREKTMREERYKHGIKNPSFSSSLLDEIYRSIDDGEPKREELKFYRETMPKKQNKIGRNIGGEAGMPTLQRACLIEKWMEQKVTQKVITQQRRQNSTE
LERKAQLDHDLDQDVLFFSSTSTSSDSSSGGFSSSDTESMYGARSRASSFNPPRPKPVRTSLSARSGKTEKTERTLFHEQRELRMFDDYHYSSASEQTPR
LEDNIIKSKSRALKIYSNLKKVKQPISPGGKLANFLNSLFTTGNSKKSKNSSSIGNFDEERKLNSGQASTCSSASSFSRSCLSKHSPSTREKLRNGVKRS
VRFYPVSVIVDEDCRPVGHKSLYEEEESSLMSVSLPTAWKIGKSPSRKTDDELKYQVMEKSRRVEEVAREFLKDHRQNQKKNDVTMIDVRGKYNDRYHDE
DEDEDDDAASYSSSDLFELDHLAVIGNDRRYCEELPVYETTHLDTNRAIANGLIV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G54200 unknown protein Potri.006G222700
[exp]
0 1
AT1G10020 Protein of unknown function (D... Potri.002G112600
[exp]
1.00 0.8452
AT5G41040 HXXXD-type acyl-transferase fa... Potri.015G100800
[exp]
13.07 0.7853
AT2G41900 C3HZnF OXS2 OXIDATIVE STRESS 2, CCCH-type ... Potri.001G266700
[exp]
14.28 0.7929
AT2G38300 GARP myb-like HTH transcriptional r... Potri.016G121800
[exp]
18.02 0.7675
AT2G47115 unknown protein Potri.014G115200
[exp]
27.49 0.7668
AT3G17650 YSL5, PDE321 pigment defective 321, YELLOW ... Potri.004G069300
[exp]
29.83 0.7561
AT2G23520 Pyridoxal phosphate (PLP)-depe... Potri.005G131300
[exp]
34.02 0.7672
Potri.006G088500
[exp]
37.46 0.7517
AT4G32300 SD2-5 S-domain-2 5 (.1) Potri.018G027300
[exp]
37.46 0.7519
Potri.006G088664
[exp]
38.34 0.7303

Potri.006G222700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.