Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12040 478 / 6e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT4G08790 110 / 1e-27 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) AT2G27450 57 / 5e-09 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT5G22300 56 / 2e-08 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44310 53 / 2e-07 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT3G44300 52 / 3e-07 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44320 52 / 4e-07 AtNIT3, NIT3 nitrilase 3 (.1) AT5G64370 47 / 1e-05 PYD3, BETA-UP PYRIMIDINE 3, beta-ureidopropionase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G214600 [exp] 114 / 1e-28 AT4G08790 474 / 8e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.008G047100 [exp] 111 / 1e-27 AT4G08790 465 / 3e-166 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.016G074200 [exp] 59 / 3e-09 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.006G207700 [exp] 55 / 3e-08 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.004G199600 [exp] 55 / 4e-08 AT5G22300 578 / 0.0 nitrilase 4 (.1) Potri.004G201400 [exp] 54 / 5e-08 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.007G115900 [exp] 46 / 3e-05 AT5G64370 720 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026464 [exp] 471 / 9e-167 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10025012 [exp] 144 / 3e-41 AT5G12040 137 / 1e-39 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10001975 [exp] 116 / 2e-29 AT4G08790 469 / 6e-168 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Lus10030303 [exp] 114 / 4e-29 AT4G08790 474 / 1e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Lus10020627 [exp] 57 / 6e-09 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10013313 [exp] 54 / 1e-07 AT5G22300 561 / 0.0 nitrilase 4 (.1) Lus10005201 [exp] 53 / 1e-07 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10007065 [exp] 48 / 9e-06 AT5G64370 673 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Lus10004862 [exp] 47 / 9e-06 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2) Lus10020436 [exp] 47 / 1e-05 AT5G64370 669 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [poplar] [flax] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Potri.006G222900.1 pacid=42768154 polypeptide=Potri.006G222900.1.p locus=Potri.006G222900 ID=Potri.006G222900.1.v4.1 annot-version=v4.1 ATGAAGTCAGCAATATCATCAACGACAACACTCTTGAGCTCAAAAAATCTGAGCCTGAAGCTCCATCTAAATCATTCCCCTTTATCTCGCTTACCCTCTT CCCTTTTCCGCTCAAAATCAAACACCCACTTCCCTTCTCTCCTACCACGTAACAACAGCACTCACAACCAGAAATCCCAAATCCACACTCCAATAATGGC TTCTTCTTTCATGCCCGAGCAAGCCAGAGCCCCTCCCGCTCTTCCCTTACCCGTTCCTCCTGTCACCAAGTTTAAGATTGGGCTGTGTCAGTTATCGGTG ACGGCTGATAAAGAGAGGAATATTGCGCACGCTCGCAAAGCAATTGAAGAGGCTGCTGCAAAGGGTGCCAAGCTTGTTATGTTGCCTGAAATATGGAATA GCCCGTATTCGAATGATTGTTTCCCAGTTTATGCTGAGGACATTGATGCAGGTGGTGAGGCGTCTCCTTCTACAGCCATGCTCTCTGAAGCTGCTGGTCT TCTGAAGGTCACAATTGTGGGTGGCTCTATACCAGAACGTTCTGGGGACCGGCTGTATAATACATGTTGTGTCTTTGATAGTGACGGAAAGTTGAAAGCC AAGCACCGGAAGATACACCTTTTTGATATTGACATTCCTGGGAAGATCACTTTTATAGAATCGAAGACTCTAACAGCAGGGGAGACTCCGACCATTGTGG ACACAGAAGTTGGTCGTATTGGTATAGGAATCTGCTATGATATTCGTTTTCAGGAACTGGCAATTATATATGCAGCAAGAGGTGCTCATTTGATATGCTA TCCTGGGGCATTCAACATGACCACTGGACCATTACATTGGGAGTTATTGCAGAGGGCAAGGGCTGCGGATAATCAGCTATATGTGGCAACTTGTTCGCCA GCTCGGGATGTTGCAGCTGGTTATGTGGCCTGGGGCCATTCCACTCTTGTAGGACCTTTTGGAGAAGTTCTGGCCACTACTGAGCATGAGGAGGACATAA TTATAGCAGAGATTGACTATTCACTACTTGAAGTGAGAAGGACAAACCTCCCCTTGACAAAGCAACGAAGAGGTGATCTTTACCAGCTGGTGGATGTTCA GAGACTGAAAAGTGACTCGTAA
AA sequence Show only first row Show all	>Potri.006G222900.1 pacid=42768154 polypeptide=Potri.006G222900.1.p locus=Potri.006G222900 ID=Potri.006G222900.1.v4.1 annot-version=v4.1 MKSAISSTTTLLSSKNLSLKLHLNHSPLSRLPSSLFRSKSNTHFPSLLPRNNSTHNQKSQIHTPIMASSFMPEQARAPPALPLPVPPVTKFKIGLCQLSV TADKERNIAHARKAIEEAAAKGAKLVMLPEIWNSPYSNDCFPVYAEDIDAGGEASPSTAMLSEAAGLLKVTIVGGSIPERSGDRLYNTCCVFDSDGKLKA KHRKIHLFDIDIPGKITFIESKTLTAGETPTIVDTEVGRIGIGICYDIRFQELAIIYAARGAHLICYPGAFNMTTGPLHWELLQRARAADNQLYVATCSP ARDVAAGYVAWGHSTLVGPFGEVLATTEHEEDIIIAEIDYSLLEVRRTNLPLTKQRRGDLYQLVDVQRLKSDS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12040			Nitrilase/cyanide hydratase an...		Potri.006G222900 [exp]	0	1
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Potri.001G295200 [exp]	2.44	0.9297
AT5G37930			Protein with RING/U-box and TR...		Potri.004G072800 [exp]	11.48	0.9274
AT2G44760			Domain of unknown function (DU...		Potri.002G138600 [exp]	11.87	0.9320
AT1G51100			unknown protein		Potri.001G417350 [exp]	12.24	0.9214
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.010G153900 [exp]	15.81	0.9310
AT3G06430		AtPPR2, EMB2750	pentatricopeptide repeat 2, em...		Potri.008G098700 [exp]	19.59	0.9181
AT2G13690			PRLI-interacting factor, putat...		Potri.007G109300 [exp]	23.55	0.8982
AT4G13650			Pentatricopeptide repeat (PPR)...		Potri.018G067500 [exp]	25.69	0.9173
AT3G04310			unknown protein		Potri.019G023400 [exp]	27.56	0.9080
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Potri.006G163100 [exp]	31.55	0.9200

Compare expression of checked genes

Potri.006G222900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.