Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16100 72 / 9e-14 unknown protein AT4G24020 72 / 2e-13 NLP7 NIN like protein 7 (.1) AT4G35270 72 / 4e-13 NLP2 Plant regulator RWP-RK family protein (.1) AT4G38340 71 / 5e-13 NLP3 Plant regulator RWP-RK family protein (.1) AT1G20640 71 / 6e-13 NLP4 Plant regulator RWP-RK family protein (.1.2) AT3G59580 71 / 7e-13 NLP9 Plant regulator RWP-RK family protein (.1.2) AT1G76350 70 / 1e-12 NLP5 Plant regulator RWP-RK family protein (.1) AT2G17150 69 / 2e-12 NLP1 Plant regulator RWP-RK family protein (.1.2) AT1G64530 68 / 4e-12 NLP6 Plant regulator RWP-RK family protein (.1) AT4G35590 64 / 3e-11 RKD5 RWP-RK domain-containing 5, RWP-RK domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G166932 [exp] 73 / 1e-13 AT4G35270 874 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.004G205500 [exp] 72 / 2e-13 AT4G35270 829 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.001G293300 [exp] 72 / 2e-13 AT4G35270 301 / 7e-92 Plant regulator RWP-RK family protein (.1) Potri.003G143000 [exp] 72 / 3e-13 AT4G24020 994 / 0.0 NIN like protein 7 (.1) Potri.001G087900 [exp] 72 / 3e-13 AT4G24020 991 / 0.0 NIN like protein 7 (.1) Potri.007G133400 [exp] 71 / 5e-13 AT2G43500 699 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.002G009700 [exp] 70 / 1e-12 AT1G20640 824 / 0.0 Plant regulator RWP-RK family protein (.1.2) Potri.005G251700 [exp] 70 / 1e-12 AT4G35270 739 / 0.0 Plant regulator RWP-RK family protein (.1) Potri.016G042900 [exp] 70 / 1e-12 AT4G35270 572 / 0.0 Plant regulator RWP-RK family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004035 [exp] 199 / 7e-60 AT5G16100 68 / 2e-12 unknown protein Lus10016018 [exp] 74 / 8e-14 AT1G76350 775 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10012257 [exp] 74 / 8e-14 AT1G20640 785 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10014428 [exp] 73 / 1e-13 AT4G35270 659 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10023930 [exp] 73 / 1e-13 AT4G35270 669 / 0.0 Plant regulator RWP-RK family protein (.1) Lus10022621 [exp] 72 / 2e-13 AT2G17150 212 / 3e-60 Plant regulator RWP-RK family protein (.1.2) Lus10003199 [exp] 72 / 3e-13 AT4G24020 953 / 0.0 NIN like protein 7 (.1) Lus10008143 [exp] 71 / 6e-13 AT3G59580 769 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10019368 [exp] 70 / 1e-12 AT2G43500 764 / 0.0 Plant regulator RWP-RK family protein (.1.2) Lus10001810 [exp] 68 / 3e-12 AT4G24020 319 / 6e-100 NIN like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02042 [poplar] [flax] RWP-RK RWP-RK domain
Representative CDS sequence Show only first row Show all	>Potri.006G223100.1 pacid=42770543 polypeptide=Potri.006G223100.1.p locus=Potri.006G223100 ID=Potri.006G223100.1.v4.1 annot-version=v4.1 ATGGCAGATCCTCGGTCCGTCGTACCCTACCATGACCCGTATGACAGCCCTATTGACTATGAACATCTAAATTTCATGAATGATGCAAATCCAAGCCTTG CAGGTTTATCCTCTGACAATGAACCTACCCCAGCAATTCCTGAATCATTCAGTGGCAGTGCAAATGCCAATGCAAACATTTTGGATCCTAATAACCCATA TGAGGATCCAATGGCTTGGAATTTTTATTATGAAAATCTTAGAGTGCAATCTCATGAGGCTGGTCCGTCACATCAGAATCAGGGACAAAGTTCTTTTGGA CCAATTCCTTATGCACCATTTCCTAACGCGTCATTTCCCAACGCATCATTTCCTGATGGACAAACTTCAAATGCATCTGGAAGAAGTGAAGAGATTTTCC TTGATGGGAGGAATATTGCTGTTTGGCCACCTGAACCAGTCCCTTTTCAATGCACTTGCTGTCAAGTTCTAAGAGAAATAATCCACACTGATGGAAACTA TACTACAAAACTTGAGATACATGGGAGAATGGGTATCATCTGTCATGCTATTCTTGAGAACCGGGATCATGTCAAGGCAATTCATCCTCAATATTATATG TTTGATTTCTGCAAGAAAAGCTTGGAGAATGTGAAGGAATTTCTGCAGAAGTATTGCGATGACAGAAGGCAGGCAGGCTTCATTATGGTCCAAGATCCAC ACTCATTCTTCTATGAAGCCCTTTGTGTTGGATACGAGTGGACGGACGATTTGCATTTTGATGAATTTCACGATCCATCCCCACCAAATTCAGACTTGCA AGCTGGAACTTTAACAGGGGAACGACAAGCAACGAATCATGGAGAGGGAGAGATTGAGACAGAGAGAACGACTCGAAGCAATCTTGCACTACAGAGGGAA AGAGCAGGAAGGTTGACACTGGATGACTTTAGACAGTATTTCCATCTCCCTATAGAAGATGCAGCGAGGAGGTTGCACTTGTGTCCCACTGTAGTGAAGA AGATATGCCGGAAATTCGGGATGACTCGATGGCCACACAGAAAGATCAAAAGCATCCATAGGCAATTAACAGATCTCCAAGTACTCTTAAATTCGAACGA TGCAGAAGAAAGGGTACGTGCACAAGTAGAAATCATGAGGCTTCAAGAAGAAATAAGAAATGCTTGTTCTGGGTCCGCTGGATGA
AA sequence Show only first row Show all	>Potri.006G223100.1 pacid=42770543 polypeptide=Potri.006G223100.1.p locus=Potri.006G223100 ID=Potri.006G223100.1.v4.1 annot-version=v4.1 MADPRSVVPYHDPYDSPIDYEHLNFMNDANPSLAGLSSDNEPTPAIPESFSGSANANANILDPNNPYEDPMAWNFYYENLRVQSHEAGPSHQNQGQSSFG PIPYAPFPNASFPNASFPDGQTSNASGRSEEIFLDGRNIAVWPPEPVPFQCTCCQVLREIIHTDGNYTTKLEIHGRMGIICHAILENRDHVKAIHPQYYM FDFCKKSLENVKEFLQKYCDDRRQAGFIMVQDPHSFFYEALCVGYEWTDDLHFDEFHDPSPPNSDLQAGTLTGERQATNHGEGEIETERTTRSNLALQRE RAGRLTLDDFRQYFHLPIEDAARRLHLCPTVVKKICRKFGMTRWPHRKIKSIHRQLTDLQVLLNSNDAEERVRAQVEIMRLQEEIRNACSGSAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16100			unknown protein		Potri.006G223100 [exp]	0	1
AT5G14345		AtENODL21	early nodulin-like protein 21 ...		Potri.001G338800 [exp]	12.84	0.9985
AT3G47570			Leucine-rich repeat protein ki...		Potri.018G120901 [exp]	18.76	0.9857
					Potri.016G017199 [exp]	19.02	0.9780
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.011G008100 [exp]	33.68	0.9089
AT5G02180			Transmembrane amino acid trans...		Potri.016G100300 [exp]	34.23	0.8208
AT5G28780			PIF1 helicase (.1)		Potri.008G203701 [exp]	35.21	0.8877
AT1G01460		ATPIPK11	Phosphatidylinositol-4-phospha...		Potri.014G093300 [exp]	40.49	0.9400
					Potri.007G077350 [exp]	42.08	0.8810
AT1G68610		PCR11	PLANT CADMIUM RESISTANCE 11 (....		Potri.010G127700 [exp]	46.03	0.9998
					Potri.003G026712 [exp]	60.92	0.9025

Compare expression of checked genes

Potri.006G223100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.