Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05670 208 / 1e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT4G20090 199 / 7e-56 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 195 / 1e-54 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G64320 186 / 7e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 186 / 8e-51 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 185 / 2e-50 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G04760 178 / 1e-48 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G46100 175 / 2e-48 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63070 174 / 2e-47 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G02060 175 / 6e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G050100 [exp] 348 / 2e-110 AT4G12070 133 / 6e-33 unknown protein Potri.005G046000 [exp] 209 / 2e-59 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G038400 [exp] 206 / 2e-58 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G075900 [exp] 205 / 6e-58 AT4G20090 806 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 204 / 2e-57 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 198 / 4e-56 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G050400 [exp] 198 / 6e-56 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 198 / 8e-56 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.014G056400 [exp] 198 / 4e-55 AT1G02060 885 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026465 [exp] 645 / 0 AT1G05670 197 / 6e-55 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10025013 [exp] 445 / 3e-153 AT1G05670 161 / 1e-43 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10027916 [exp] 202 / 2e-56 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10038377 [exp] 201 / 2e-56 AT4G20090 841 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036238 [exp] 201 / 2e-56 AT4G20090 832 / 0.0 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 200 / 3e-56 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10036020 [exp] 193 / 9e-53 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 190 / 5e-52 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 191 / 1e-51 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017658 [exp] 188 / 3e-51 AT1G02060 792 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G223300.1 pacid=42770160 polypeptide=Potri.006G223300.1.p locus=Potri.006G223300 ID=Potri.006G223300.1.v4.1 annot-version=v4.1 ATGGCTATGCCACCACCAGCAGCAACAGCAAGAACCCTAACCCGCCATCCTCGCTCTTCTGAGCTAGCCTCCCTGGTCACTGCCATAACCTCTTGTCTCG AAACCCTAAACCCACAAAACCCTAACCCTAAACACATCAATCCAACCCATCTAAACCAGTTCTCCCCTCACCTGGACTCCAACTTAGTCATTGAAGTCAT CAAAGAACAGCAACCCAATCCTTACCAAGCCCTCTTCTTTTTCAACTGGGCATCAAACCTGAACCCAAACCCAAACAACTACTCTCACAATCACCGATGC TATGTAGCCATCATTGACCTTCTCCTCTCTCACTCGCTTTTTCCCATTGCCAAAAACCTCCTTGAAAAACATGGCACGTTTTCTGATCTTTTAGTTAGTA AACTTATTAGAGCTTATGGGTATAGTGGGGATACTAAAAGTGCAATCTTTTGGTTTCATAAAGTGAAAGAGATTCAACAAGGGAAGTGCTTATTTTCTTG GAATGCTATTTTGGGTGTGTTAGTGAAAGTCAATCAGATTAATGTAGCAAAGTCATTTTTTGATCAAATTGTGAATGATGCCGTTGTAAAGCCTGATGCT TCAACTTATACAACAATGATTAGAGGGTTTTGCAAAGTGGGTATGATTGACAATGCTAGGAAAGTGTTTGATGAAATGATTTGTGAGCCTAATTTGATTA CTTGCAATACCTTGATTAATGGTTATTGTAAGAAAGGTGATATGGAGAATGCAAGGATATTTTTGTGTAGGATGATGGAGAGTAAGGACTGTTTGCCAGA TACGGTTACTTATAGTACTCTGATTGATGGTTATTGTAAGAAAGGGGAATTGAATGAGGCAAGGAAGTGGATGGATGGGATGTTGATTCGGGGTTGCAAC CCGAATTTATGGACCTATAATGCTATTATTTATGGTTTGTGTTTGAGAGGAAATGTTGATGAGGCTAGGAGGTTGCTGACAAAGATGAGACTGAATGGGG TGAAAGAAAATGTTGCAACTCATTTGAGTATTTTGAAGGGCCTTTCCGTTGCGGGGAAGTCGGAAGAAGCTATTGGATATTTCAGCGAGATGATTAGAAA AGGAATGAAACTTGATGCAAAAGAGCATGAAGTTGTGATTACTGCGTATTGCAAGATGAGGAAACCCGATGAAGCAATTTCCCTTTTGAAGGAAATGCAG GCTAAGGGCATTAGTCGGAGTGTTGGAAGTTTCAATGCTGTGCTTAGGATTCTTGTGGAGATTGGGGAGCTTGATAAAGCAGTTCTTCTTCTTAAACAAG TGAAGAATATGGGATGCCTTCCAAATTTGGTGTCGTATAGCACCGTGATATGTGGTCTTTGCAGGTCCCATGGTAGGATGCAAGAAGTTGCAGGTCTTGT AGATGACATGCTTCAGGATGGTTTTGAGATGGATGCGACCTTGTATAGTTGCTTAGTCGGTGGTTTCTGTGAAGCTGGCAATGAGGAAATGGCAATGCGT GCCTTTTATGACTCAATTAATAAGAATTATGTCATTAATTTGCAGAGCTTTTCATTTTTTGTCAACCTGATGTGTGGAAAGGGAAAGGTTATCGAGGCTG AACAAATATTCAAGGATATGTGTAGGAGATGCTCGTTAGTTGACGTGGACAGTTACCAGAGGGTCCTAGATGATCAATTGCATAAACACTCAGGGAGAAG ATGA
AA sequence Show only first row Show all	>Potri.006G223300.1 pacid=42770160 polypeptide=Potri.006G223300.1.p locus=Potri.006G223300 ID=Potri.006G223300.1.v4.1 annot-version=v4.1 MAMPPPAATARTLTRHPRSSELASLVTAITSCLETLNPQNPNPKHINPTHLNQFSPHLDSNLVIEVIKEQQPNPYQALFFFNWASNLNPNPNNYSHNHRC YVAIIDLLLSHSLFPIAKNLLEKHGTFSDLLVSKLIRAYGYSGDTKSAIFWFHKVKEIQQGKCLFSWNAILGVLVKVNQINVAKSFFDQIVNDAVVKPDA STYTTMIRGFCKVGMIDNARKVFDEMICEPNLITCNTLINGYCKKGDMENARIFLCRMMESKDCLPDTVTYSTLIDGYCKKGELNEARKWMDGMLIRGCN PNLWTYNAIIYGLCLRGNVDEARRLLTKMRLNGVKENVATHLSILKGLSVAGKSEEAIGYFSEMIRKGMKLDAKEHEVVITAYCKMRKPDEAISLLKEMQ AKGISRSVGSFNAVLRILVEIGELDKAVLLLKQVKNMGCLPNLVSYSTVICGLCRSHGRMQEVAGLVDDMLQDGFEMDATLYSCLVGGFCEAGNEEMAMR AFYDSINKNYVINLQSFSFFVNLMCGKGKVIEAEQIFKDMCRRCSLVDVDSYQRVLDDQLHKHSGRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.006G223300 [exp]	0	1
AT1G23450			Tetratricopeptide repeat (TPR)...		Potri.008G212000 [exp]	2.00	0.9318
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.014G132100 [exp]	2.64	0.9221
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083800 [exp]	2.82	0.9298
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.012G061300 [exp]	4.00	0.9152	ARP901,ARP4.2
AT3G14730			Pentatricopeptide repeat (PPR)...		Potri.006G090900 [exp]	6.63	0.9231
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	8.83	0.9238
AT2G44020			Mitochondrial transcription te...		Potri.013G116700 [exp]	9.32	0.8953
AT2G03880		REME1	required for efficiency of mit...		Potri.004G208000 [exp]	10.09	0.9224
AT5G16860			Tetratricopeptide repeat (TPR)...		Potri.012G041200 [exp]	11.48	0.8931
AT2G37310			Pentatricopeptide repeat (PPR)...		Potri.006G216100 [exp]	12.44	0.9229

Compare expression of checked genes

Potri.006G223300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.