Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72820 428 / 1e-150 Mitochondrial substrate carrier family protein (.1) AT5G26200 400 / 1e-139 Mitochondrial substrate carrier family protein (.1) AT5G15640 230 / 3e-73 Mitochondrial substrate carrier family protein (.1) AT1G34065 75 / 9e-15 SAMC2 S-adenosylmethionine carrier 2 (.1) AT4G11440 69 / 1e-12 Mitochondrial substrate carrier family protein (.1) AT5G51050 64 / 4e-11 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G39460 62 / 2e-10 SAMC1, SAMT1 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) AT1G07030 61 / 2e-10 Mitochondrial substrate carrier family protein (.1) AT1G79900 60 / 7e-10 ATMBAC2, BAC2 RABIDOPSIS MITOCHONDRIAL BASIC AMINO ACID CARRIER 2, Mitochondrial substrate carrier family protein (.1) AT4G01100 59 / 1e-09 ADNT1 adenine nucleotide transporter 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G050300 [exp] 608 / 0 AT1G72820 435 / 2e-153 Mitochondrial substrate carrier family protein (.1) Potri.017G098500 [exp] 223 / 2e-70 AT5G15640 460 / 3e-164 Mitochondrial substrate carrier family protein (.1) Potri.004G117000 [exp] 215 / 4e-67 AT5G15640 434 / 1e-153 Mitochondrial substrate carrier family protein (.1) Potri.008G100100 [exp] 202 / 2e-62 AT5G15640 338 / 5e-116 Mitochondrial substrate carrier family protein (.1) Potri.016G125200 [exp] 87 / 5e-19 AT1G07030 436 / 1e-154 Mitochondrial substrate carrier family protein (.1) Potri.003G127600 [exp] 80 / 5e-16 AT4G11440 437 / 3e-146 Mitochondrial substrate carrier family protein (.1) Potri.005G085900 [exp] 71 / 2e-13 AT4G39460 487 / 9e-175 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.005G197200 [exp] 69 / 4e-13 AT4G39460 417 / 3e-147 SAM TRANSPORTER1, S-adenosylmethionine carrier 1 (.1.2) Potri.010G121500 [exp] 66 / 6e-12 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025015 [exp] 422 / 4e-148 AT5G26200 414 / 3e-145 Mitochondrial substrate carrier family protein (.1) Lus10026468 [exp] 419 / 7e-147 AT5G26200 416 / 7e-146 Mitochondrial substrate carrier family protein (.1) Lus10026466 [exp] 418 / 3e-146 AT5G26200 409 / 5e-143 Mitochondrial substrate carrier family protein (.1) Lus10041498 [exp] 221 / 3e-69 AT5G15640 494 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10012597 [exp] 218 / 7e-67 AT5G15640 488 / 9e-173 Mitochondrial substrate carrier family protein (.1) Lus10035134 [exp] 211 / 1e-65 AT5G15640 477 / 2e-170 Mitochondrial substrate carrier family protein (.1) Lus10031969 [exp] 182 / 2e-55 AT5G15640 404 / 3e-143 Mitochondrial substrate carrier family protein (.1) Lus10038063 [exp] 143 / 2e-42 AT1G72820 108 / 7e-30 Mitochondrial substrate carrier family protein (.1) Lus10017849 [exp] 71 / 2e-13 AT1G74240 430 / 6e-151 Mitochondrial substrate carrier family protein (.1) Lus10026395 [exp] 66 / 8e-12 AT2G30160 483 / 5e-173 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.006G223600.3 pacid=42769936 polypeptide=Potri.006G223600.3.p locus=Potri.006G223600 ID=Potri.006G223600.3.v4.1 annot-version=v4.1 ATGAGTTTGAGTGCTGCCGAGGATAATTCGGCGTCAGAGATTCATCTACCAGCTGATATAGATTGGCATATGCTTGACAAGTCCAAGTTTTTCTTTTTTG GAGCAGCTTTATTTTCAGGCGTATCAGCTGCTCTTTACCCTATTGTTGTTTTAAAGACTAGGCAACAGGTTTTGCCTACTCAAATTTCGTCTCTCAAATT GTCATTGTCAATTATGAATCATGAAGGTGTGAGAGGATTCTACAGGGGCTTTGGTACTTCTTTGATGGGTACAATCCCAGCTCGAGCACTTTACATGACA GCACTTGAGATTACCAAGAGTAGTGTTGGGACTGCAACTGTTAGGTTAGGGTGTTCTGATACTACTGCAACAGCTATTGCTAATGCTGCTGCTGGGTTGA GTTCTGCCATGGCTGCACAGCTAGTTTGGACCCCAATTGATGTTGTGAGCCAAAGACTCATGGTTCAAGATTGTAACGCTAGCAGTATCAAGAGTAGCAA GAATATGATTCCCTGTTCAAGTCCTTGTAGGTACGTGAATGGTATCGATGGCTTTAGGAAGATCTTGAATGCAGATGGTCCAAGAGGGTTGTATAGAGGA TTTGGGATATCAATATTGACTTATGCACCATCTAATGCAGTTTGGTGGGCGTCTTATTCTGTGGCTCATAGGCTTGTTTGGGGTTGTATCGGTTGCTATG CCAATAAAAAAGATGAGAATGCTGTAAATGGTGGTGGGGGTTGTGGTTATACGCCTATTTCAAAGGAAATGGTGGCAGTACAAGGAGTGTGTGCAGCCAT GGCTAGTGGAGTTTCGGCTATGATTACTATGCCACTTGACACAATTAAGACACGCTTGCAGGTTTTGGATGGAGAGGAAAATGGAAGAACAAGGCCGTTG ACAGTTATGCAAACAGTTAAGAATTTGGTGAAGGAAGGTGGTTTTGCAGCTTGTTATAGAGGTCTGGGACCAAGGTGGGTTTCAATGGCTATGTCTGCAA CAACCATGATCACAACATACGAGTTTTTGAAACGGTTATCTGCCAAGAACAGAGAGAGCTTGACCTCATGA
AA sequence Show only first row Show all	>Potri.006G223600.3 pacid=42769936 polypeptide=Potri.006G223600.3.p locus=Potri.006G223600 ID=Potri.006G223600.3.v4.1 annot-version=v4.1 MSLSAAEDNSASEIHLPADIDWHMLDKSKFFFFGAALFSGVSAALYPIVVLKTRQQVLPTQISSLKLSLSIMNHEGVRGFYRGFGTSLMGTIPARALYMT ALEITKSSVGTATVRLGCSDTTATAIANAAAGLSSAMAAQLVWTPIDVVSQRLMVQDCNASSIKSSKNMIPCSSPCRYVNGIDGFRKILNADGPRGLYRG FGISILTYAPSNAVWWASYSVAHRLVWGCIGCYANKKDENAVNGGGGCGYTPISKEMVAVQGVCAAMASGVSAMITMPLDTIKTRLQVLDGEENGRTRPL TVMQTVKNLVKEGGFAACYRGLGPRWVSMAMSATTMITTYEFLKRLSAKNRESLTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72820			Mitochondrial substrate carrie...		Potri.006G223600 [exp]	0	1
AT2G17020			F-box/RNI-like superfamily pro...		Potri.009G139500 [exp]	2.64	0.7074
AT3G47160			RING/U-box superfamily protein...		Potri.004G041200 [exp]	6.92	0.6427
AT5G42990		UBC18	ubiquitin-conjugating enzyme 1...		Potri.002G030800 [exp]	7.07	0.6577
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Potri.001G051200 [exp]	8.36	0.6754
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Potri.002G177600 [exp]	9.16	0.6549	Pt-GIF2.1
AT4G31410			Protein of unknown function (D...		Potri.006G275400 [exp]	10.39	0.6415
AT5G25360			unknown protein		Potri.006G068600 [exp]	12.04	0.6786
AT5G54540			Uncharacterised conserved prot...		Potri.011G130000 [exp]	12.36	0.6614
AT2G20740			Tetraspanin family protein (.1...		Potri.013G134200 [exp]	12.64	0.6811
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.001G013800 [exp]	13.56	0.6907

Compare expression of checked genes

Potri.006G223600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.