Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51160 175 / 1e-49 Ankyrin repeat family protein (.1) AT4G10720 154 / 8e-42 Ankyrin repeat family protein (.1.2) AT5G15500 150 / 4e-40 Ankyrin repeat family protein (.1.2) AT5G54620 139 / 1e-36 Ankyrin repeat family protein (.1) AT1G14500 135 / 7e-35 Ankyrin repeat family protein (.1) AT5G54610 131 / 2e-33 ANK ankyrin (.1) AT1G14480 130 / 3e-33 Ankyrin repeat family protein (.1.2) AT1G34050 121 / 1e-29 Ankyrin repeat family protein (.1) AT2G31820 122 / 2e-29 Ankyrin repeat family protein (.1) AT2G01680 120 / 4e-29 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G223700 [exp] 439 / 8e-151 AT5G15500 145 / 3e-38 Ankyrin repeat family protein (.1.2) Potri.018G050600 [exp] 251 / 1e-81 AT5G15500 91 / 1e-21 Ankyrin repeat family protein (.1.2) Potri.014G051100 [exp] 241 / 2e-74 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.015G111300 [exp] 200 / 8e-59 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.013G017254 [exp] 187 / 3e-54 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.012G113800 [exp] 184 / 6e-53 AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1) Potri.018G042200 [exp] 179 / 7e-50 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.008G048400 [exp] 119 / 1e-28 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.006G214500 [exp] 117 / 8e-28 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034256 [exp] 219 / 2e-65 AT5G51160 140 / 2e-36 Ankyrin repeat family protein (.1) Lus10034255 [exp] 206 / 1e-60 AT5G51160 125 / 4e-31 Ankyrin repeat family protein (.1) Lus10029007 [exp] 189 / 8e-54 AT5G51160 128 / 4e-32 Ankyrin repeat family protein (.1) Lus10041537 [exp] 184 / 6e-53 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10029008 [exp] 178 / 5e-50 AT5G51160 121 / 8e-30 Ankyrin repeat family protein (.1) Lus10037894 [exp] 178 / 3e-49 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10029089 [exp] 153 / 2e-42 AT5G51160 104 / 4e-25 Ankyrin repeat family protein (.1) Lus10038609 [exp] 129 / 9e-34 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10024844 [exp] 128 / 1e-31 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10003986 [exp] 127 / 4e-31 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.006G223800.1 pacid=42770042 polypeptide=Potri.006G223800.1.p locus=Potri.006G223800 ID=Potri.006G223800.1.v4.1 annot-version=v4.1 ATGGTACTCATAAAGATAGGATTGGAGGGGACTATGGAGGAGATGCAAAGAAGACTTAAAGAAGCAGCGGTGGAAGGGAATGTAATTGCCTTGCTGAAAT TGCTTGAAGAAGATAAGCTTGTCCTTGATGGATGTGCTACAGATTGTTTTACAGAGACACCTCTGCACATATCTGCCATGCTTGGACACTTGGAATTTAC AAGAAAAATCTTATGTCGAAAACCTGAATTCGCAAAAGAACTCGATTTCCTTGGATCATCTCCACTTCACTTGGCAACAGCAAATGGGCACCTTGAAGTG GTGAGAGCACTGCTGTCGGTCAACCCTGACATGTGCTTTGCTCAGAATCGAGATGGCCGGAACCCACTTCATATTGCTGTGATCAAAGGCCGAGTTGATG TCTTGAAAGAATTGGTTCAAAACAAACCCGAAGCTGTTCTTCATCGGACTGCACGAGGTGAGACTGTCCTACATCTCTGTGTCAAACACTTCCAATTGGA GGCATTGAAGCTCCTGGTCGAGACAATCAAAGACTATGGATTTATAAATTCTAAGGACGAGGATGGCTCAACTGTCCTGCACTTAGCGGTAGCCGATAAA GAAATTGAGATCATAAGTTTTCTGATCATGAAAACCGAGATTGAGGTAAACGCGATAAATGCTAGTGGTTTCACAGTGCTAGACATTGCCTTAGCACAGG GTCGAAGAAATTGGAAAGATGTAGACGTCCAGGATTCCCTGCATCAAGTAGGGGCTTCAAGTGCAAAAGACCTCTCTTCAACAATGCACAGATTGGAAGC TGTTGGGGCCGTGAACTTACGATCAGAAGATCATTTTACAAGCTTACAGTCGCGGTTGAAAAGGAAGTATCAAAGGAGACAGAGCTATGGGTTGGGAGAA AAGCGAAATGCGTTAATGATAGTGGCATCCCTCATCGCAACCATGGCTTTCCAAGCTGGGATTAGTCCACCAGGTGGTCTTTGGCAAGAGGATTCACAGG GGGCAACATCAAATGAACATCATGAAGCTGGCCGGTCCATAATGGCTGATAAGTTACCAGCTGCTTACAATAAATTTGTGATGCACAACTCCATAGCTTT TCTAGCATCTCTCAGTGTGATCTTGCTACTGATAAGTGGCTTACCATTTAGGTGGAGGTTTTCAATGTGGATTCTGACGGCAATCATGTGGGTTGCAATC ACCGAATCAACATTTACGTACTTGATTTCCATATACTGTCTGTCTAGCCTTCATCAGCGTAGGACTTACATTGTGACCGTGGTTGTACTCAGTGTGGTGA TGCTTGGATTGTTGAGCGTTCTTCTTGTGGGGCACTCTGTCCGCTTGATTGCAAAGATTGTCAAGCTTGGAAGAAGGTTAATGGCGCCAAGGGATCGTCG AATTTTGTTTGAGTGA
AA sequence Show only first row Show all	>Potri.006G223800.1 pacid=42770042 polypeptide=Potri.006G223800.1.p locus=Potri.006G223800 ID=Potri.006G223800.1.v4.1 annot-version=v4.1 MVLIKIGLEGTMEEMQRRLKEAAVEGNVIALLKLLEEDKLVLDGCATDCFTETPLHISAMLGHLEFTRKILCRKPEFAKELDFLGSSPLHLATANGHLEV VRALLSVNPDMCFAQNRDGRNPLHIAVIKGRVDVLKELVQNKPEAVLHRTARGETVLHLCVKHFQLEALKLLVETIKDYGFINSKDEDGSTVLHLAVADK EIEIISFLIMKTEIEVNAINASGFTVLDIALAQGRRNWKDVDVQDSLHQVGASSAKDLSSTMHRLEAVGAVNLRSEDHFTSLQSRLKRKYQRRQSYGLGE KRNALMIVASLIATMAFQAGISPPGGLWQEDSQGATSNEHHEAGRSIMADKLPAAYNKFVMHNSIAFLASLSVILLLISGLPFRWRFSMWILTAIMWVAI TESTFTYLISIYCLSSLHQRRTYIVTVVVLSVVMLGLLSVLLVGHSVRLIAKIVKLGRRLMAPRDRRILFE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51160			Ankyrin repeat family protein ...		Potri.006G223800 [exp]	0	1
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G224100 [exp]	6.70	0.9623
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211366 [exp]	9.16	0.9519
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.001G080900 [exp]	9.21	0.9552
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.011G007800 [exp]	11.13	0.9555	Pt-WRKY42.1
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Potri.013G090400 [exp]	11.31	0.9576
AT5G24110	WRKY	ATWRKY30, WRKY3...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.012G031700 [exp]	15.29	0.9569
AT1G34420			leucine-rich repeat transmembr...		Potri.019G084800 [exp]	15.87	0.9537
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G055000 [exp]	18.33	0.9513
AT5G38260			Protein kinase superfamily pro...		Potri.017G117010 [exp]	20.14	0.9331
					Potri.002G247600 [exp]	22.22	0.9404

Compare expression of checked genes

Potri.006G223800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.