Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26170 139 / 2e-42 WRKY ATWRKY50, WRKY50 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) AT5G64810 122 / 1e-35 WRKY ATWRKY51, WRKY51 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) AT5G49520 110 / 2e-29 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT1G29860 106 / 3e-28 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT4G39410 105 / 5e-28 WRKY ATWRKY13, WRKY13 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) AT2G47260 106 / 6e-28 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1) AT1G69310 105 / 6e-28 WRKY ATWRKY57, WRKY57 WRKY DNA-binding protein 57 (.1.2) AT3G01970 101 / 7e-28 WRKY ATWRKY45, WRKY45 WRKY DNA-binding protein 45 (.1) AT4G18170 103 / 3e-27 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT2G44745 101 / 3e-27 WRKY WRKY12 WRKY family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G079800 [exp] 126 / 5e-37 AT5G64810 140 / 3e-42 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Potri.005G085200 [exp] 119 / 3e-34 AT5G64810 145 / 4e-44 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Potri.008G103300 [exp] 111 / 1e-29 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.007G078200 [exp] 105 / 2e-28 AT4G39410 189 / 4e-59 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Potri.005G086400 [exp] 104 / 3e-28 AT4G39410 184 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 13, WRKY DNA-binding protein 13 (.1) Potri.010G147700 [exp] 107 / 4e-28 AT5G49520 182 / 8e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.002G193000 [exp] 105 / 5e-28 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.014G118200 [exp] 105 / 1e-27 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1) Potri.011G087900 [exp] 107 / 2e-27 AT4G26640 555 / 0.0 WRKY family transcription factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006848 [exp] 135 / 5e-40 AT5G26170 133 / 7e-39 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Lus10036624 [exp] 115 / 2e-32 AT5G26170 125 / 2e-36 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 50, WRKY DNA-binding protein 50 (.1) Lus10035841 [exp] 112 / 4e-31 AT5G64810 131 / 4e-38 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 51, WRKY DNA-binding protein 51 (.1) Lus10037785 [exp] 112 / 3e-30 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10017067 [exp] 111 / 9e-30 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10026409 [exp] 103 / 5e-28 AT2G38470 194 / 3e-59 WRKY DNA-binding protein 33 (.1) Lus10001265 [exp] 107 / 1e-27 AT2G38470 394 / 2e-132 WRKY DNA-binding protein 33 (.1) Lus10004537 [exp] 104 / 1e-27 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10016595 [exp] 106 / 5e-27 AT4G26640 556 / 0.0 WRKY family transcription factor family protein (.1.2) Lus10012322 [exp] 105 / 5e-27 AT2G04880 278 / 2e-89 zinc-dependent activator protein-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.006G224100.1 pacid=42769071 polypeptide=Potri.006G224100.1.p locus=Potri.006G224100 ID=Potri.006G224100.1.v4.1 annot-version=v4.1 ATGTCCAGTCCTAAGTTTAGCACACAGCAGGATACACCCGAGCTGAGTGACTTCGCTCACGACCAGCTTTCCAATTTTGAGCTCTCAGAGTTCTTGACCT TCGATGAATGGATAGCGCTAGAAGATGCTCCATCGTCCATAGCTTCCAGTTATGCCTGCAACCCGGTTTATAGAGCACATGTCGTTGGTGAGTCAGGTGG AAGTAGCAGCCCTCGTGAAGAGCTAAGTGGTGGAGAGGGTGAAGAAGGGCGAGAGAAGAAGGAAGCCAAAGAAAGGGTTGCTTTCAAAACAAAATCAGAG ATTGAAATACTAGATGATGGGTACAAGTGGAGGAAATATGGGAAAAAGATGGTGAAGAATAGTCCAAACCCGAGGAATTACTACAGGTGCTCGGTTGAAG GCTGCCCTGTGAAGAAGAGAGTAGAAAGAGACAGGGATGATCCAAGATATGTAATAACAACCTACGAGGGCATTCACACTCACCAGAGCTTTTCCTAA
AA sequence Show only first row Show all	>Potri.006G224100.1 pacid=42769071 polypeptide=Potri.006G224100.1.p locus=Potri.006G224100 ID=Potri.006G224100.1.v4.1 annot-version=v4.1 MSSPKFSTQQDTPELSDFAHDQLSNFELSEFLTFDEWIALEDAPSSIASSYACNPVYRAHVVGESGGSSSPREELSGGEGEEGREKKEAKERVAFKTKSE IEILDDGYKWRKYGKKMVKNSPNPRNYYRCSVEGCPVKKRVERDRDDPRYVITTYEGIHTHQSFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G224100 [exp]	0	1
AT2G46150			Late embryogenesis abundant (L...		Potri.001G098100 [exp]	2.82	0.9911
AT3G02645			Plant protein of unknown funct...		Potri.001G337900 [exp]	3.74	0.9902
AT1G34420			leucine-rich repeat transmembr...		Potri.019G084800 [exp]	4.12	0.9777
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.013G040300 [exp]	4.24	0.9899
AT4G39830			Cupredoxin superfamily protein...		Potri.005G079400 [exp]	6.00	0.9898	Pt-AO1.3
AT5G51160			Ankyrin repeat family protein ...		Potri.006G223800 [exp]	6.70	0.9623
AT5G24110	WRKY	ATWRKY30, WRKY3...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.012G031700 [exp]	6.92	0.9815
AT2G40740	WRKY	ATWRKY55, WRKY5...	WRKY DNA-binding protein 55 (....		Potri.013G090400 [exp]	7.07	0.9810
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.016G003000 [exp]	9.89	0.9789
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G009700 [exp]	9.89	0.9833

Compare expression of checked genes

Potri.006G224100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.