Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26160 641 / 0 unknown protein AT5G20610 624 / 0 unknown protein AT1G42550 95 / 2e-19 PMI1 plastid movement impaired1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G145500 [exp] 815 / 0 AT5G20610 565 / 0.0 unknown protein Potri.002G006100 [exp] 122 / 5e-28 AT1G42550 796 / 0.0 plastid movement impaired1 (.1) Potri.005G255500 [exp] 113 / 3e-25 AT1G42550 754 / 0.0 plastid movement impaired1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021568 [exp] 645 / 0 AT5G20610 827 / 0.0 unknown protein Lus10017162 [exp] 597 / 0 AT5G20610 762 / 0.0 unknown protein Lus10025003 [exp] 141 / 2e-35 AT5G20610 97 / 2e-21 unknown protein Lus10039886 [exp] 113 / 3e-25 AT1G42550 816 / 0.0 plastid movement impaired1 (.1) Lus10002170 [exp] 113 / 5e-25 AT1G42550 818 / 0.0 plastid movement impaired1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF10358 [poplar] [flax] NT-C2 N-terminal C2 in EEIG1 and EHBP1 proteins
Representative CDS sequence Show only first row Show all	>Potri.006G224200.3 pacid=42770631 polypeptide=Potri.006G224200.3.p locus=Potri.006G224200 ID=Potri.006G224200.3.v4.1 annot-version=v4.1 ATGATGCTTTCGAAAGCTGAGTCTAGAAATGGTGATGGTGATGGAAGTTCGAATAGTGGTCAACTGCTGAGAGACATTGAGGCAATAAGCAAAGCCCTAT ACTTGCATAAAACCCCACAAAAGGCTTTGATTTCCCCATCCAGTGCTCGATCTAAATCAGTTGAGAAACCCCGCTTACCAGAATCAAAATCGAGTCTGAA CCCACAAAGTTTTAATGAAACTGTGTCATCTAAGGACAAGAAATCATCATCAGCATGGAATTGGAAGAAGCCCTTGAAAGCTTTAGCCCACATTGGTCGT CAAAAGTTCAATATTTGTTTCTTTCTCCACGTGCATTCTATTGAAGGGTTACCCCCGAGTTTTAATGGTATGAATTTGTCTGTGCATTGGAAGAGGAAGG ATGTGGTTTTGCAGACACGTGCAGCAAAGGTTTTGAAGGGAGTTGCTGAATTTGATGAGACTTTGATGCATAAATGTTCTGTATATGGTTCAAGAAGTGG GCCCTATCATGCAGCAAAGTATGAAATGAAGCTTTTCTTGATTTATGCATCCATAATTGGGGCTCCTGGCATTGACATGGGGAAACAGTGGGTAGATCTG ACACTGTTGTTGCCATTGAATTCGGAGGAACTGGAGGGAGAGAAAAGTACTGATAAATGGACTACAAGCTATAAGCTTGAGGGCAAGGCTAAGGGTGCTA CTCTAAATGTTAGTTTTGGTTTCTCGGTATTGAGAGACAATTTTATTGAATCAAGAAGTAATATGAGTGTCTCTGACCTTCTAAATTTAGTGCATGATAG GCCTGCAGTGGATCCCAAAACAGGTATTGGGCACACTAACAGTAATGGAATGCTTCGGCGACTTGAAAGTGTTCCTAGTGATTTAAATCGTCGGCCTCCT CTCTCTTCTCAATCTGTTGATGCGAAGAGTTACCATGATGTGTCATCAAATTTGGGATTGGAACTCTCCAAGTCAATAAATTTTCTATATGAAAAACTCG ATGAGGTGAACTGGCAGAATTCAGAAAAACTTGACGCATTATCTGGCCATATGCAGCAACTCAAACCAAAGTTTCACTTGGAGTTTGAGCTTGATGAAGC TGACCGTGGAAATGAGTGTGATATTGAGTTTACTGTTGTTGAGCAGGGGATAGAAACATCTGAAATGGAACAAATGGAACCAGAACAAGATGATGTTCAG ACTACTGATGGTTCTGCAATTGAAACCATTGACTTGGATGAAATAATCAAGGATGATGATATAGCCCCTGATGAGGAGACAAAGTTCCATTCGGAGGGAA ATATTTTCCATGGACATGTAGATGAGGTTTTAATGGATGATTGCAAACATGAAGAGAATAGTGCAAGTAGGAAAGGATCAATTATGGAAGATCTGGAATC AGCTTTTAATAACCAGCTCATTTCAGAATCTGAGAAGTTGGAATCCCAGCTTGCTATGAGCAAGTTTCTAGAGAATGAAAATTACATGGAAACTAAATCA AATTACAAGGCTAATAAAGTGGCAAAGAAATCGCTGAGCCTGGATGAATTTACCACGTCTGTTGCAAGTGATTTTTTAAATATGCTGGGGATTGAGCATA GTCCATTTGGTCTGAGTTCAGACAGTGAACCTGAGTCTCCTAGAGAGCGCTTGTTAAGAGAGTTTGAAAAAGAAGCCATAGCTTCCGGCAGCTTCATCAT GGATTTTGATGGAAACAGAGAGCATGAAGAATTGGGTCGCATTGCTCAGGCTGGGTCTAGTTACGAGGACCTTTCTGATGATCTTGATTTATCTCTGGTT ATTCAGGCTGCTGAGCAGGAGCACTGGAGAGCAAGTCAGTTGCTAAGTGGAAGAAGGAAGGTGAAGGTGCTTGAAGACTTGGAGACAGAAGCTTTAATGA GAGAATGGGGCTTAGATGAGGGGGCCTTTCAGAATTCTCCACGTTATTGCTCTGATGGATTTGGGAGTCCAATTGAGCTTCTTCCTGAGAAACAAGTTGA ATTACCTCCACTTGGAGATGGCTTTGGACCCTTTATCCATACCAATGATGGAGGTTGTCTGCGGTCTATGAATCCTTCTCTTTTCAGAAATTCTAAAAAT GCAGGGAGCTTAGTTATGCAAGTTTCTTGTCCTGTAGTGCTACCTGCAGAATTAGGTTCTGATATTATGGAGATATTACAGTATCTGGCATCGGTTGGCA TCACAAAACTATCTCTGCTGACAAACAAATTAATGCCTTTGGAGGATATCACCGGGAAGATATTGCAACAAATAGCAGAGGATATTACTGAAAGGAAGGC TCCTTTGTGTCATGAATCATTGTTTGGGAAAGATCCATTTAATAGGAGAAAGGAAGTTGAAGGTGTTTGTTCTCATCAGTTCTTTAATAACATAAAGTCC AGCCTTATCGGCAGTGAGGTAGACTGGGAATATGTTAGTCTTGAAGATCTTGCACCTTTGGCAATGAAAAAGATTGATGCCATGTCCATTGAAGGGTTGA GAATCCAGTCCGGCATGTCTGAGGAAGCGGCACCATCAAGCATCAGTCCCCAGTCTCCTGGAAAGATGCTGGCTTTTGAAGGGAAGGATGCCAATCTTGT TGGGTTTCTCAGTTTGGGAGGTGCAGAATTGCACCATCTTGATGCTGAAGATGCTGACAGTGGTGCTGATGGATTATTGTCTCTCTCTATAACATTGGAG GAGTGGTTGAGACTTGATGCTGGAATCATCAGCGAGGAAGATGAAGTTGATGAGCACACAATAAGGATCCTTGCAGCCCATCGTGCTAAGTGCATAGATT TTAATGGAAGGTTTACAGGAGACATTAATTGGGGCACAGCATCTGGTGGAAAGCATGGTTTGTTGGGGAACAACCTCACGGTAGCTCTCAAGATACTGCT TAGGGATCCTCTTCGAAATTTTGAGCCGGTTGGTGCTCCGATGCTTGCTCTAATCCAAGTGGAGAGGACTTCTATCCATCCCATGTCAAAAGTGTATGGT TCGGTGTTAGAAAGAAGTAGAAATGAAGAAGATGATCATGAATGGATCCAGTACGAAAAGAATGATTGTCTTTGGTTTAAAATCACTGAAGTCCATGTTT CAGGGTTGAATACTGAACCTGGCAAGACACAACATTGGGCTACCAAAACACAGCAACAATCTGGGACACGCTGGCTGGTGGCAAGTGGCATGTCTAAGTC GTACAAGCAACCATTTTCGAAGTCGAAGGCCATTGTATTAGCATACCCACAACTAATCAGAAACGTGGAGGCAGGTGATATCTTGTGGAGCATAAGCTCT CAAGCTAAGGACACAGTAACTAGATGGAAAGACCTGGCAGGATTTGTTCCACACGTACGGAACCCTAATGTTATCTTTCCTGGATGA
AA sequence Show only first row Show all	>Potri.006G224200.3 pacid=42770631 polypeptide=Potri.006G224200.3.p locus=Potri.006G224200 ID=Potri.006G224200.3.v4.1 annot-version=v4.1 MMLSKAESRNGDGDGSSNSGQLLRDIEAISKALYLHKTPQKALISPSSARSKSVEKPRLPESKSSLNPQSFNETVSSKDKKSSSAWNWKKPLKALAHIGR QKFNICFFLHVHSIEGLPPSFNGMNLSVHWKRKDVVLQTRAAKVLKGVAEFDETLMHKCSVYGSRSGPYHAAKYEMKLFLIYASIIGAPGIDMGKQWVDL TLLLPLNSEELEGEKSTDKWTTSYKLEGKAKGATLNVSFGFSVLRDNFIESRSNMSVSDLLNLVHDRPAVDPKTGIGHTNSNGMLRRLESVPSDLNRRPP LSSQSVDAKSYHDVSSNLGLELSKSINFLYEKLDEVNWQNSEKLDALSGHMQQLKPKFHLEFELDEADRGNECDIEFTVVEQGIETSEMEQMEPEQDDVQ TTDGSAIETIDLDEIIKDDDIAPDEETKFHSEGNIFHGHVDEVLMDDCKHEENSASRKGSIMEDLESAFNNQLISESEKLESQLAMSKFLENENYMETKS NYKANKVAKKSLSLDEFTTSVASDFLNMLGIEHSPFGLSSDSEPESPRERLLREFEKEAIASGSFIMDFDGNREHEELGRIAQAGSSYEDLSDDLDLSLV IQAAEQEHWRASQLLSGRRKVKVLEDLETEALMREWGLDEGAFQNSPRYCSDGFGSPIELLPEKQVELPPLGDGFGPFIHTNDGGCLRSMNPSLFRNSKN AGSLVMQVSCPVVLPAELGSDIMEILQYLASVGITKLSLLTNKLMPLEDITGKILQQIAEDITERKAPLCHESLFGKDPFNRRKEVEGVCSHQFFNNIKS SLIGSEVDWEYVSLEDLAPLAMKKIDAMSIEGLRIQSGMSEEAAPSSISPQSPGKMLAFEGKDANLVGFLSLGGAELHHLDAEDADSGADGLLSLSITLE EWLRLDAGIISEEDEVDEHTIRILAAHRAKCIDFNGRFTGDINWGTASGGKHGLLGNNLTVALKILLRDPLRNFEPVGAPMLALIQVERTSIHPMSKVYG SVLERSRNEEDDHEWIQYEKNDCLWFKITEVHVSGLNTEPGKTQHWATKTQQQSGTRWLVASGMSKSYKQPFSKSKAIVLAYPQLIRNVEAGDILWSISS QAKDTVTRWKDLAGFVPHVRNPNVIFPG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26160			unknown protein		Potri.006G224200 [exp]	0	1
AT2G20010			Protein of unknown function (D...		Potri.018G085900 [exp]	5.19	0.7337
AT3G09090		DEX1	DEFECTIVE IN EXINE FORMATION 1...		Potri.016G110800 [exp]	16.67	0.6688
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Potri.010G244800 [exp]	17.02	0.6674	CPK1,Pt-CPK2.1
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.015G053400 [exp]	21.21	0.7564
AT5G19400		SMG7	Telomerase activating protein ...		Potri.006G038500 [exp]	29.84	0.7328
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Potri.011G086500 [exp]	35.63	0.7503	FIM1.1
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.011G079100 [exp]	37.08	0.6919	KCO2.1
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G351532 [exp]	38.47	0.7340
AT5G48340			unknown protein		Potri.014G174300 [exp]	39.79	0.7162
AT5G46170			F-box family protein (.1)		Potri.011G082900 [exp]	43.68	0.6949

Compare expression of checked genes

Potri.006G224200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.