Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33090 1355 / 0 ATAPM1, APM1 aminopeptidase M1 (.1) AT1G63770 95 / 1e-19 Peptidase M1 family protein (.1.2.3.4.5) AT5G13520 83 / 5e-16 peptidase M1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G039200 [exp] 1059 / 0 AT4G33090 1102 / 0.0 aminopeptidase M1 (.1) Potri.001G101975 [exp] 111 / 5e-25 AT1G63770 1269 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.001G102051 [exp] 107 / 1e-24 AT1G63770 692 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.003G129500 [exp] 109 / 4e-24 AT1G63770 1594 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Potri.008G045900 [exp] 87 / 2e-17 AT5G13520 965 / 0.0 peptidase M1 family protein (.1) Potri.010G215700 [exp] 83 / 4e-16 AT5G13520 926 / 0.0 peptidase M1 family protein (.1) Potri.001G199000 [exp] 63 / 7e-12 AT4G33090 49 / 7e-08 aminopeptidase M1 (.1) Potri.015G050800 [exp] 44 / 0.0009 AT1G73960 1552 / 0.0 TBP-associated factor 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026448 [exp] 1403 / 0 AT4G33090 1389 / 0.0 aminopeptidase M1 (.1) Lus10025001 [exp] 1403 / 0 AT4G33090 1385 / 0.0 aminopeptidase M1 (.1) Lus10025002 [exp] 1251 / 0 AT4G33090 1196 / 0.0 aminopeptidase M1 (.1) Lus10026449 [exp] 143 / 2e-39 AT4G33090 147 / 1e-41 aminopeptidase M1 (.1) Lus10024641 [exp] 99 / 7e-21 AT1G63770 1610 / 0.0 Peptidase M1 family protein (.1.2.3.4.5) Lus10040361 [exp] 65 / 1e-10 AT5G13520 729 / 0.0 peptidase M1 family protein (.1) Lus10023479 [exp] 49 / 1e-05 AT5G13520 551 / 0.0 peptidase M1 family protein (.1) Lus10036010 [exp] 45 / 0.0002 AT1G73960 1466 / 0.0 TBP-associated factor 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01433 [poplar] [flax] Peptidase_M1 Peptidase family M1 domain CL0159 [poplar] [flax] E-set PF11838 [poplar] [flax] ERAP1_C ERAP1-like C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G224500.7 pacid=42767761 polypeptide=Potri.006G224500.7.p locus=Potri.006G224500 ID=Potri.006G224500.7.v4.1 annot-version=v4.1 ATGGATCAGTTCAAAGGACAGGCACGCCTCCCAAAATTCGCCATCCCTAAACGCTACGACATCCGCCTCAAACCCGAATTAACCGCCTGCACTTTCGCTG GCTCCGTCGCGATCGATCTCGATATCGTTGAAAATACCAACTTCATCGTCCTCAACGCTGCTGACCTCTCCATCAACTCTGCTTCCGTCTCCTACTCCTC CTCCTCCAAGCAGGTTTTGCAACCAGTGAAAGTTGAGTTGGTTGAAGCAGATGAGATATTGGTGTTGGAATTTGCGGAAACGCTTCCGATTGGGATTGGG GTTCTTGACATTGTATTTGATGGTGTTTTGAATGACAAAATGAAAGGTTTTTACAGAAGTACTTATGAGATTAATGGAGAGAAGAAGAACATGGCCGTCA CGCAGTTTGAGCCTGTTGATGCTAGAAGATGTTTTCCGTGTTGGGATGAGCCTGTTTGCAAGGCTACATTCAAGATCACATTGGAAGTGCCAGCTGAACT TGTGGCTCTTTCTAATATGCCGATTATCGAGGAGAAAGTGAATGGAGATTTGAAGACGGTTTCATATCAAGAAACGCCTATCATGTCTACTTATTTGGTT GCAATTGTCGTTGGCCTGTTTGATTATGTGGAAGATCATACATCTGATGGGGTGAAAGTTCGTGTATATTGTCAAGTTGGGAAAACAAAACAAGGGAACT TTGCATTGCATGTTGCTGTGAAGACGCTTGAGTTATTTAAAGGGTATTTTGCTGTGCCATACGCCCTTCCGAAGTTGGATATGATTGCAATCCCTGATTT TGCTGCTGGGGCAATGGAGAATTATGGCTTAGTTACATACCGTGAAACAGCCTTGCTTTATGATGATCAGCATTCTGCTGCTGCCAACAAGCAGAGGGTT GCTACTGTTGTGGCACACGAGCTAGCACACCAGTGGTTTGGCAATCTTGTAACAATGGAGTGGTGGACGCATTTATGGCTAAACGAGGGTTTTGCTACAT GGGTGAGCTATCTAGCTACTGATAGCTTGTTCCCAGATTGGAAAATATGGACCCAGTTTCTTGATGAATGTACGGAGGGTCTTAAGCTGGATGGCCTCGC AGAATCCCACCCAATTGAGGTGGACATAAATCATGCTTCTGAGATTGATGAAATTTTTGATGCAATAAGCTATCGAAAGGGCGCGTCTGTTATCCGGATG CTACAAAGCTATCTTGGTGCCAAGAACTTTCAGAGGTCACTTGCTTCATACATAAAAAAGCATGCGTACTCAAATGCAAAGACAGAAGACTTATGGGCTG CTCTTGAGGAGGGATCTGGTGAACCTGTGAACAAGCTAATGAATTCATGGACGAGGCAGCAAGGATATCCAGTTGTATCTGTCAAATTCAAGGATCAGAA ATTGGAATTTGAACAGTCACAATTCCTGTCAAGTGGTGCCCCTGGAGATGGACAATGGATTGTCCCAATAACTTTATGCTGCTGTTCATACGATGCACAC AAGAGTTTCTTATTGCAAACAAAGTCAGAAACTCAAGATGTCAAGGAACTCCTGGGTTCCTGCCAGGCGGGGAGTGGAAGTTCTTGGATTAAAGTTAATG TGGAACAGACTGGTTTCTATAGGGTTAAGTATGATGAGGAGCTCAGAGCTAGACTTGGATGTGCTATAGAGAAGAAGAACCTCACTGAAACAGACAGATT TGGCATTTTGGATGATTCATTTGCCCTTTGTATGGCTCGTCAGCAATCTTTGACCTCTTTGCTTACACTGATGGGTGCTTACAGAGAGGAACTTGAGTAC ATTGTGCTATCTAACTTGATTAATATAAGTTCTAAAGTTGGAAGGATTGCAGCAGATGCAACCCCTGATCTAAAGGATGACATTAACCAATTTTTTATCA ATCTTCTCCAGTTTTCTGCAGAGAAGCTTGGTTGGGATCCTAAGCAAGGCGAAAGCCATTTGGATGCAATGTTAAGAGGAGAAGTTTTGACTGCCCTTGC TTATTTTCGACATGATCTGACACTGGATGAAGCAAGTAGGCGCTTTCATGCATTTTTAGAGGACAGAAATACGCCACTCCTCCCACCTGATATAAGAAAG GCAGCATATGTGGCTGTAATGCAGAGAGTCAGCACTTCAAACAGATCAGATTATGATTCTCTTCTACAGGTTTATAGAGAGACTGATCTAAGCCAGGAGA AAACACGCATTCTGGGTTCAATAGCATCTTGTCCAGATCCAAACATAATTCTTGAAGCTCTCAACTTTTTGTTGACATCAGAGGTTCGTAGTCAAGATGC TGTTTTTGGACTTGCTGTTAGCAAGGAAGGACGTGAAACAGCTTGGGCTTGGCTGAAGGATAAATGGGATCACATTACAAATACTTGGGGTTCAGGATTT TTATTAACTCGCTTTGTCAGCATGATTGTCTCACCGTTTGCTTCATTTGAGAAGGCCAAGGAGGTAGAGGAGTTCTTTGCAAGCCGCACGAAGCCTGCCA TTTCTAGAACCTTGAAGCAGAGCATTGAGCGGGTGCACATCAATGCAAATTGGGTTCAAAGCATTCAGAAGGAAACAAAACTTGGCGAGGCTGTGAAAGA ATTGGCTTTCAGGAAATACTAG
AA sequence Show only first row Show all	>Potri.006G224500.7 pacid=42767761 polypeptide=Potri.006G224500.7.p locus=Potri.006G224500 ID=Potri.006G224500.7.v4.1 annot-version=v4.1 MDQFKGQARLPKFAIPKRYDIRLKPELTACTFAGSVAIDLDIVENTNFIVLNAADLSINSASVSYSSSSKQVLQPVKVELVEADEILVLEFAETLPIGIG VLDIVFDGVLNDKMKGFYRSTYEINGEKKNMAVTQFEPVDARRCFPCWDEPVCKATFKITLEVPAELVALSNMPIIEEKVNGDLKTVSYQETPIMSTYLV AIVVGLFDYVEDHTSDGVKVRVYCQVGKTKQGNFALHVAVKTLELFKGYFAVPYALPKLDMIAIPDFAAGAMENYGLVTYRETALLYDDQHSAAANKQRV ATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATWVSYLATDSLFPDWKIWTQFLDECTEGLKLDGLAESHPIEVDINHASEIDEIFDAISYRKGASVIRM LQSYLGAKNFQRSLASYIKKHAYSNAKTEDLWAALEEGSGEPVNKLMNSWTRQQGYPVVSVKFKDQKLEFEQSQFLSSGAPGDGQWIVPITLCCCSYDAH KSFLLQTKSETQDVKELLGSCQAGSGSSWIKVNVEQTGFYRVKYDEELRARLGCAIEKKNLTETDRFGILDDSFALCMARQQSLTSLLTLMGAYREELEY IVLSNLINISSKVGRIAADATPDLKDDINQFFINLLQFSAEKLGWDPKQGESHLDAMLRGEVLTALAYFRHDLTLDEASRRFHAFLEDRNTPLLPPDIRK AAYVAVMQRVSTSNRSDYDSLLQVYRETDLSQEKTRILGSIASCPDPNIILEALNFLLTSEVRSQDAVFGLAVSKEGRETAWAWLKDKWDHITNTWGSGF LLTRFVSMIVSPFASFEKAKEVEEFFASRTKPAISRTLKQSIERVHINANWVQSIQKETKLGEAVKELAFRKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33090		ATAPM1, APM1	aminopeptidase M1 (.1)		Potri.006G224500 [exp]	0	1
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.013G010900 [exp]	31.17	0.5078	ALPHA.11
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Potri.007G009100 [exp]	40.84	0.5823	Pt-MDH.1
AT1G09870			histidine acid phosphatase fam...		Potri.008G072600 [exp]	130.97	0.5153
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.007G146600 [exp]	134.08	0.5047	GDI.2
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Potri.011G156900 [exp]	147.06	0.5109
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.001G163700 [exp]	186.90	0.4958	Pt-ERF1.3
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.016G011000 [exp]	251.43	0.4760

Compare expression of checked genes

Potri.006G224500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.