Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72770 503 / 8e-175 HAB1 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) AT1G17550 482 / 2e-166 HAB2 homology to ABI2 (.1) AT5G57050 444 / 5e-153 AtABI2, ABI2 ABA INSENSITIVE 2, Protein phosphatase 2C family protein (.1.2) AT4G26080 437 / 6e-150 AtABI1, ABI1 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) AT1G07430 254 / 1e-78 HAI2 highly ABA-induced PP2C gene 2 (.1) AT2G29380 249 / 1e-77 HAI3 highly ABA-induced PP2C gene 3 (.1) AT3G11410 235 / 6e-72 ATPP2CA, AHG3 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) AT5G51760 229 / 2e-69 AHG1 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1) AT5G59220 229 / 2e-69 SAG113, HAI1 senescence associated gene 113, highly ABA-induced PP2C gene 1 (.1) AT5G53140 164 / 3e-45 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G060300 [exp] 965 / 0 AT1G72770 493 / 8e-171 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.003G044200 [exp] 596 / 0 AT1G72770 576 / 0.0 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Potri.006G164632 [exp] 296 / 1e-95 AT4G26080 300 / 1e-98 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Potri.015G018800 [exp] 261 / 3e-82 AT1G07430 236 / 2e-74 highly ABA-induced PP2C gene 2 (.1) Potri.008G059200 [exp] 248 / 6e-77 AT1G07430 362 / 1e-122 highly ABA-induced PP2C gene 2 (.1) Potri.009G037300 [exp] 242 / 5e-74 AT1G07430 401 / 2e-137 highly ABA-induced PP2C gene 2 (.1) Potri.012G002700 [exp] 236 / 1e-72 AT2G29380 225 / 8e-71 highly ABA-induced PP2C gene 3 (.1) Potri.010G199600 [exp] 236 / 2e-72 AT3G11410 386 / 9e-133 ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA, protein phosphatase 2CA (.1) Potri.015G133900 [exp] 236 / 3e-72 AT5G51760 338 / 1e-113 ABA-hypersensitive germination 1, Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026447 [exp] 682 / 0 AT1G72770 465 / 1e-159 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10025000 [exp] 655 / 0 AT1G72770 467 / 1e-160 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10012962 [exp] 289 / 1e-92 AT4G26080 315 / 2e-104 ABA INSENSITIVE 1, Protein phosphatase 2C family protein (.1) Lus10040738 [exp] 252 / 1e-77 AT1G07430 429 / 7e-148 highly ABA-induced PP2C gene 2 (.1) Lus10016493 [exp] 245 / 3e-75 AT1G07430 421 / 2e-145 highly ABA-induced PP2C gene 2 (.1) Lus10034965 [exp] 235 / 2e-72 AT1G72770 249 / 3e-79 HYPERSENSITIVE TO ABA1, homology to ABI1 (.1.2.3) Lus10004703 [exp] 233 / 8e-71 AT2G29380 392 / 3e-135 highly ABA-induced PP2C gene 3 (.1) Lus10040270 [exp] 229 / 2e-69 AT2G29380 390 / 1e-134 highly ABA-induced PP2C gene 3 (.1) Lus10019017 [exp] 200 / 5e-59 AT2G29380 280 / 3e-92 highly ABA-induced PP2C gene 3 (.1) Lus10003399 [exp] 190 / 2e-56 AT2G29380 252 / 2e-82 highly ABA-induced PP2C gene 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.006G224600.3 pacid=42769046 polypeptide=Potri.006G224600.3.p locus=Potri.006G224600 ID=Potri.006G224600.3.v4.1 annot-version=v4.1 ATGGAGGAGATGTATCCGGCGGTTGCAGTGCCATTTAGAGTAGGTAATTCAGCCTGTGAAAGTCCATCCATAGATACCCACATGGATATCACAAGACTTT TAATGGCAGACACGGCTAGCTTATTATCTGATACTGTAACTAAGGTTCCTACTGCTGGGGATAAGGATTGTAATTGTGGTGATTTAGATAATGAAGTTAA AGATACAGCGGCTCCAGCTTCAAAAGAGGACAGGGGAGGAAGAGGAGCCCCTTTGTTGGATATGATCTCTGAAACTGAAAGAAATTGGGTTGTTGGCGAT GATGGGATAACACGGGAAAGTGAGGAAGATGATTCTTTGTCGTTGGAGGGTGATCCAATTCTTGATAGTTCTTGTTCTCTTTCAGTGGCTAGTGAGACAA GTAGCTTATGTGGAGAGGATCTCTTGAGTTTGGAGACCACCTCTGAGGTAGGAACACTGAATTCTGTAGAAATTAAAAAGAGCATTGGAGGTGTTGATAT TGTTGCCAAGACAGCAGATTTGGGGGATTCAAACGGTGACACTGTTGTGAGCGATCCCTCTTCGGTGGCAGGAAGTGTTGAGGAAGAGGCTGGGGATGGA TCTGATGCAAAGACATCTTCTGTGGTTCTTCAGTTGACTCTGGAAAGAGGGACCAGTGGAACAGTCTCAAAAAGTGTTTTTGAAGTGGACTATGTACCCC TTTGGGGATTTACATCTGTTTGTGGAAGGAGGCCGGAGATGGAAGATGCAGTTGCTACGGTGCCTTATTTTTTAAAATTTCCTATTCAAATGCTGATTGG CGACCGATTACTTGATGGAATGAGCAAGTATTTGCCTCACCAGACTGCTCATTTCTTTGGAGTTTATGATGGTCATGGAGGCTCGCAAGTGGCAAATTAT TGTCATGATCGTATCCATTCAGCTTTGTCCGAGGAGATAGAATTTGTTAAGAATGGCCTGAGTGATGGAAGTATTAAGGATAGTTGCCAGGAGCAGTGGA AAAATGCTTTCACCAATTGTTTTCTCAAGGTTGATGCTGAAGTCGGAGGAAAGGCTGGTGCCGAACCAGTTGCCCCAGAAACTGTTGGTTCTACTGCTGT TGTGGCCATTATTTGTTCATCCCACATCATAGTAGCAAACTGTGGAGACTCACGAGCAGTTCTTTGTCGCGGGAAAGAACCAATGGCATTATCAGTGGAT CATAAACCAAACCGAGAAGATGAGTATGCAAGGATAGAAGCAGCTGGAGGCAAGGTCATACAGTGGAATGGGCATCGTGTCTTTGGTGTTCTAGCAATGT CAAGGTCTATTGGTGATAGATATTTGAAACCATGGATTATTCCAGAACCCGAAGTTATGTTTATTCCTAGGGCAAAAGAAGATGAATGTCTCATTCTGGC AAGTGATGGTTTGTGGGATGTCATGTCAAATGAAGAAGCATGTGATCTGGCACGCAAACGAATACTTGTCTGGCACAAAAAGAATGGCGTTGCGCTCTCC TCCTCAAGGAGCGAGGGAATTGATCCTGCAGCTCAAGCAGCAGCTGAGTTCCTCTCAAACCGTGCCCTTCAAAAAGGAAGCAAGGATAACATCACTGTAA TCGTGGTGGATCTGAAAGCGCAAAGGAAGTTCAAAACCAAAACATGA
AA sequence Show only first row Show all	>Potri.006G224600.3 pacid=42769046 polypeptide=Potri.006G224600.3.p locus=Potri.006G224600 ID=Potri.006G224600.3.v4.1 annot-version=v4.1 MEEMYPAVAVPFRVGNSACESPSIDTHMDITRLLMADTASLLSDTVTKVPTAGDKDCNCGDLDNEVKDTAAPASKEDRGGRGAPLLDMISETERNWVVGD DGITRESEEDDSLSLEGDPILDSSCSLSVASETSSLCGEDLLSLETTSEVGTLNSVEIKKSIGGVDIVAKTADLGDSNGDTVVSDPSSVAGSVEEEAGDG SDAKTSSVVLQLTLERGTSGTVSKSVFEVDYVPLWGFTSVCGRRPEMEDAVATVPYFLKFPIQMLIGDRLLDGMSKYLPHQTAHFFGVYDGHGGSQVANY CHDRIHSALSEEIEFVKNGLSDGSIKDSCQEQWKNAFTNCFLKVDAEVGGKAGAEPVAPETVGSTAVVAIICSSHIIVANCGDSRAVLCRGKEPMALSVD HKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVMFIPRAKEDECLILASDGLWDVMSNEEACDLARKRILVWHKKNGVALS SSRSEGIDPAAQAAAEFLSNRALQKGSKDNITVIVVDLKAQRKFKTKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.006G224600 [exp]	0	1
AT3G05327			Cyclin family protein (.1)		Potri.013G023000 [exp]	16.58	0.8117
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.006G078000 [exp]	22.09	0.7809	HEN2.1
AT4G16130		ATISA1, ARA1	arabinose kinase (.1)		Potri.018G003100 [exp]	22.62	0.7352
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.018G138100 [exp]	23.23	0.8033
AT4G03540			Uncharacterised protein family...		Potri.011G052100 [exp]	34.87	0.7495
AT1G18870		ATICS2, ICS2	ARABIDOPSIS ISOCHORISMATE SYNT...		Potri.012G070000 [exp]	47.56	0.7665
AT2G20830			transferases;folic acid bindin...		Potri.013G145600 [exp]	62.32	0.7251
AT1G11380			PLAC8 family protein (.1)		Potri.011G040100 [exp]	62.92	0.7499
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.006G057200 [exp]	67.10	0.7626
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G192000 [exp]	78.26	0.7566

Compare expression of checked genes

Potri.006G224600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.