Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76940 117 / 2e-32 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G21320 117 / 3e-31 nucleotide binding;nucleic acid binding (.1.2) AT1G06960 52 / 7e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G42240 53 / 8e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT2G47580 52 / 9e-08 U1A spliceosomal protein U1A (.1) AT2G30260 52 / 1e-07 U2B'' U2 small nuclear ribonucleoprotein B (.1) AT3G13700 52 / 1e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G21215 44 / 7e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G070200 [exp] 127 / 2e-35 AT1G76940 215 / 4e-70 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.012G019300 [exp] 124 / 4e-34 AT1G76940 167 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.015G009000 [exp] 123 / 5e-34 AT1G76940 170 / 8e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G203600 [exp] 54 / 2e-08 AT2G47580 349 / 1e-122 spliceosomal protein U1A (.1) Potri.007G046600 [exp] 53 / 7e-08 AT2G42240 334 / 4e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.019G121400 [exp] 52 / 8e-08 AT2G30260 305 / 7e-106 U2 small nuclear ribonucleoprotein B (.1) Potri.013G153700 [exp] 52 / 8e-08 AT2G30260 297 / 8e-103 U2 small nuclear ribonucleoprotein B (.1) Potri.014G127800 [exp] 50 / 4e-07 AT2G47580 347 / 6e-122 spliceosomal protein U1A (.1) Potri.003G035000 [exp] 49 / 2e-06 AT3G13700 348 / 3e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028599 [exp] 125 / 3e-34 AT1G21320 206 / 4e-66 nucleotide binding;nucleic acid binding (.1.2) Lus10018903 [exp] 124 / 2e-32 AT1G21320 182 / 5e-54 nucleotide binding;nucleic acid binding (.1.2) Lus10028598 [exp] 100 / 5e-24 AT1G76940 135 / 9e-38 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10042240 [exp] 52 / 1e-07 AT2G30260 352 / 2e-124 U2 small nuclear ribonucleoprotein B (.1) Lus10026413 [exp] 52 / 1e-07 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1) Lus10008424 [exp] 49 / 1e-06 AT2G47580 365 / 4e-129 spliceosomal protein U1A (.1) Lus10003358 [exp] 47 / 6e-06 AT2G47580 367 / 7e-130 spliceosomal protein U1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.006G224900.4 pacid=42770188 polypeptide=Potri.006G224900.4.p locus=Potri.006G224900 ID=Potri.006G224900.4.v4.1 annot-version=v4.1 ATGGCGGAACCGTACAACATGTACGATGCTCTTCAAGACAGAGGGTCTGTTTCAAGGCTTTCTTTTCCAGGTTATGTATCAACTGAAGCACCACCATTGG CATCTCATAGTTTTCCGGTTTCTACTGAATTTCCGGGTGCTTCTTCGGATTTTCTACAAAGAGATATAAATCCATTGCAGCTGGGATCATATGGTTTGAA TGGTTATTCTGGTGTTGGGTTTCGTCCTGAACCTGTTATTGGTGGAGTAATGCCAGGAGCTAGTGGGAAGGGGTATTCCTCTCCTCTAGAAGATCCGAGT TTATTAGCCCAAAGAGGGGATGCTTCAATGCATGCTATTGGTGGAGCAATTCCAGGATCTACCGGAAAGGGGTACCCATCTCCACTAGAAGATCCAAGTT TATTAAGCCAAAGAGGGGATGCTTCAGTCCGTGTTACTGCAGCGATTCCTGACATGATAAATGACAGGCCTGGTTCATTGAGAAGTGCAGATGGTCCTCC AGTGCCAAAAGGGGAATCAAACATTCTTTTTGTTGATGGACTCCCTACTGATTGTACCAGAAGAGAAGTTGGCCATCTCTTTCGTCCATTTATCGGCTAC AAGGAAATCAGAGTTGTTCACAAGGAGGCCAGGAAAAGTGGAGATAGGGCTACTGTCTTGTGCTTTGTGGAATTCACTGATGCAAATTGTGCTGCGACTG CCATGGAAGCTCTTCAAGGTTACAAGTTTGATGATAAGAAACCTGACTCTCCAACCTTGAAAATCCAATTTGCTCGCTTTCCTTTCCGACCTCCATCTGA TCGTGATGGGAAACGGATTGGGACCCACGCTAGCTGTTAG
AA sequence Show only first row Show all	>Potri.006G224900.4 pacid=42770188 polypeptide=Potri.006G224900.4.p locus=Potri.006G224900 ID=Potri.006G224900.4.v4.1 annot-version=v4.1 MAEPYNMYDALQDRGSVSRLSFPGYVSTEAPPLASHSFPVSTEFPGASSDFLQRDINPLQLGSYGLNGYSGVGFRPEPVIGGVMPGASGKGYSSPLEDPS LLAQRGDASMHAIGGAIPGSTGKGYPSPLEDPSLLSQRGDASVRVTAAIPDMINDRPGSLRSADGPPVPKGESNILFVDGLPTDCTRREVGHLFRPFIGY KEIRVVHKEARKSGDRATVLCFVEFTDANCAATAMEALQGYKFDDKKPDSPTLKIQFARFPFRPPSDRDGKRIGTHASC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21320			nucleotide binding;nucleic aci...		Potri.006G224900 [exp]	0	1
AT2G01690			ARM repeat superfamily protein...		Potri.010G106700 [exp]	4.69	0.7396
AT2G42410	C2H2ZnF	ATZFP11, ZFP11	zinc finger protein 11 (.1)		Potri.002G041700 [exp]	5.29	0.7754
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Potri.010G223900 [exp]	10.24	0.7497
AT5G01075			Glycosyl hydrolase family 35 p...		Potri.014G017600 [exp]	11.48	0.7543
					Potri.006G273733 [exp]	12.48	0.7664
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.012G127700 [exp]	12.84	0.7590
AT3G50120			Plant protein of unknown funct...		Potri.007G047700 [exp]	15.00	0.7079
					Potri.001G121350 [exp]	17.43	0.7462
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Potri.007G144701 [exp]	18.97	0.7211
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Potri.017G081400 [exp]	20.14	0.7345

Compare expression of checked genes

Potri.006G224900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.