Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24490 659 / 0 ATRGTA1 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) AT5G41820 533 / 0 ATRGTA2 RAB geranylgeranyl transferase alpha subunit 2 (.1) AT3G59380 69 / 3e-12 FTA, PLP, ATFTA, PFT/PGGT-IALPHA PLURIPETALA, farnesyltransferase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G127500 [exp] 73 / 1e-13 AT3G59380 433 / 2e-153 PLURIPETALA, farnesyltransferase A (.1) Potri.019G119300 [exp] 43 / 0.0006 AT4G03260 549 / 0.0 Outer arm dynein light chain 1 protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031441 [exp] 825 / 0 AT4G24490 667 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10022404 [exp] 808 / 0 AT4G24490 656 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10001518 [exp] 767 / 0 AT4G24490 630 / 0.0 RAB geranylgeranyl transferase alpha subunit 1 (.1.2) Lus10000763 [exp] 74 / 1e-13 AT3G59380 421 / 1e-147 PLURIPETALA, farnesyltransferase A (.1) Lus10015954 [exp] 71 / 8e-13 AT3G59380 414 / 1e-145 PLURIPETALA, farnesyltransferase A (.1) Lus10042569 [exp] 49 / 8e-06 AT1G10095 387 / 2e-132 Protein prenylyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01239 [poplar] [flax] PPTA Protein prenyltransferase alpha subunit repeat
Representative CDS sequence Show only first row Show all	>Potri.006G225100.4 pacid=42768917 polypeptide=Potri.006G225100.4.p locus=Potri.006G225100 ID=Potri.006G225100.4.v4.1 annot-version=v4.1 ATGCACGGTCGGCCTCGCAAAGCCCCAAAACCTGAAGATTTAGCTGCCTCCACTGCCAAAGCCGAGAAACTAAGAATCCTCCAATCTCAATTCCTTTTAA ATCACCACCAAAAAATTTATACGAAGGAAGCATTAGAGCTAAGCTCTAAACTTTTAGAGATCAATCCAGAATGTTACACTGCTTGGAACTATAGAAAACA TGCTGTTCAACACAGTCTTTTTGAGTCCAACTTGGATCCTGACTCTGTTAACTCAATTCTTGATCAAGAACTTCGAGTGGTAGAGAATGCGTTGAGGCAA AATTTCAAGTCATACGGTGCATGGTATCATCGTAAATGGGTGCTAAATAAAGGGCATTCTTCTACAGAAAATGAGTTGAGGCTTTTGGACAAGCTTCAAA ATGTAGATCCTCGGAATTTTCATGCCTGGAATTACCGCAGATTCGTAGCGGCATTATTGAATAGATCTGATGAAGATGAACTGAATCACACACAGGATTT TATTGATAAGAATTTTAGTAATTATTCTGCCTGGCACAATCGAAGTGTGCTTGTGTCTAACTTGATGAAGAAAAAGGTTCAAGCATTTTCACGGAAAGAT GAGGTCTTGATCAGGGAGTATGAATTGGTTCGCGAAGCGGTTTTTACAGATGAAGATGATCAGAGTGGTTGGTTTTATCATCTTTGGCTACTTGATCAAA CTGTTAAAGCTGAGTCTCCTCTGCTAGCTTCTTCATGGCCTGCTCATGGTTCTGAGATCACTCTATCCGGAGATAGGTACCTAGATCTAGGTTCTTCTTC TCCATTCAACACCAACCAATTTGATTCTGGATCGCTTCCACTCATTCTTTACTTCAATCAAGCTGTTGAGGGTGTAAATGCATCAACAGTTACAGTTTCA TCTGGGTTAAACGTGAATATGGATGTAATTTGGAAACCTATTTTATCAAATAACTCTAGAACTACCCAAGTTTGGGTTGGACAATTGAAGTTCCCTGAGG TGGAGCTTGATTCTTTAGGAGCTTATACCATGGAGGTTACCCTTGGACATTCTCAAGGAATCATTTCTTCCAGTGGTTTTCACTATAGCCATCCTTCTCA TTTTTCATTTACGGTGCATGTACTACCTGCCAAAACAGAACCAGTGGAAGGATTAGGTTCAGAGAAAATATCATGGAGAGATGAAAATTTTCATATTTAT GAATCAGATTCTCTGGAGTCAAATTCAGTTCTCCCCCTTGACCACCTAAGTATTAAGAATGAACGTGAGCCAACACATTCCTCATGGCAAGCAAAAATTA TAGATGAAGAGATAAGCAACTTTCGTGAATTGTTGGACTGTAAAATTGGAAAACTGACACTTGCAAGACTGTTGACTGCTCGTGATGCGTTGATGTCTTC TGACAAACCAGTCCATTCTGAAGAAGTTCTTAGACTTTATAGTGAATTAATGAAGTTGGATCCACCGCATTCTCGATTCTACAAGGATGAACACAGCTTG GTTTTATTAGAAAAGGTGATTTCTGGTAGGGAGTCTTTACTGAGTTATTGCTTTCGCTATAGGAACTTAACTTCATCAAGCAGTAGCAATCCCATTTGCC TAAGGCTCAATGGATTATCATTATCACGATTGGGGTCTTTTGAGAAATTATTGTGGGTCCAAATGCTAGACCTCAGCCACAATGAGCTCCAATCAATTGA AGGTTTGGAGGCCATGCAACTTCTCTCACACTTGAATTTGAGTAAGAATAAATTTGGTAGTTTTACTTCTCTTGAGCCTCTGAGACATTTGAAGTCAATG AAAGTGTTAGATCTTTCATACAATGAGATAGGCTCACACTCTATTGATACAACAAGATATCTGTGCTCTTCTCCTTTGTGTCACTCAGTCGGGAGTGAAT GGGATGGCAGTGAAACTGTGACTGATGGTGTGAGTTTGGTGAGCTATTGGGAAGCCTTTTTTATTTTGAGAGGCTTGAAGTTGACTCAAATAGACATAGC AGGGAATGCAATTGCTGATGAGAAATTTACGGCATTTCTGGCTAAGGTCCTGCCTGCACTCAAGTGGCTGGATGGTGTACAATTGAACTGA
AA sequence Show only first row Show all	>Potri.006G225100.4 pacid=42768917 polypeptide=Potri.006G225100.4.p locus=Potri.006G225100 ID=Potri.006G225100.4.v4.1 annot-version=v4.1 MHGRPRKAPKPEDLAASTAKAEKLRILQSQFLLNHHQKIYTKEALELSSKLLEINPECYTAWNYRKHAVQHSLFESNLDPDSVNSILDQELRVVENALRQ NFKSYGAWYHRKWVLNKGHSSTENELRLLDKLQNVDPRNFHAWNYRRFVAALLNRSDEDELNHTQDFIDKNFSNYSAWHNRSVLVSNLMKKKVQAFSRKD EVLIREYELVREAVFTDEDDQSGWFYHLWLLDQTVKAESPLLASSWPAHGSEITLSGDRYLDLGSSSPFNTNQFDSGSLPLILYFNQAVEGVNASTVTVS SGLNVNMDVIWKPILSNNSRTTQVWVGQLKFPEVELDSLGAYTMEVTLGHSQGIISSSGFHYSHPSHFSFTVHVLPAKTEPVEGLGSEKISWRDENFHIY ESDSLESNSVLPLDHLSIKNEREPTHSSWQAKIIDEEISNFRELLDCKIGKLTLARLLTARDALMSSDKPVHSEEVLRLYSELMKLDPPHSRFYKDEHSL VLLEKVISGRESLLSYCFRYRNLTSSSSSNPICLRLNGLSLSRLGSFEKLLWVQMLDLSHNELQSIEGLEAMQLLSHLNLSKNKFGSFTSLEPLRHLKSM KVLDLSYNEIGSHSIDTTRYLCSSPLCHSVGSEWDGSETVTDGVSLVSYWEAFFILRGLKLTQIDIAGNAIADEKFTAFLAKVLPALKWLDGVQLN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24490		ATRGTA1	RAB geranylgeranyl transferase...		Potri.006G225100 [exp]	0	1
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.010G023800 [exp]	1.73	0.7302	Pt-CUL1.3
AT1G19025			DNA repair metallo-beta-lactam...		Potri.007G106700 [exp]	5.74	0.6829
AT3G54190			Transducin/WD40 repeat-like su...		Potri.013G091700 [exp]	7.34	0.6377
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.014G150000 [exp]	11.48	0.6342
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.001G163700 [exp]	13.56	0.6421	Pt-ERF1.3
AT3G13330		PA200	proteasome activating protein ...		Potri.001G470600 [exp]	15.49	0.6556
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.003G071700 [exp]	20.19	0.6197	ERF39,ERF1.4
AT5G10770			Eukaryotic aspartyl protease f...		Potri.018G015100 [exp]	21.16	0.5818
AT5G37730			unknown protein		Potri.004G089700 [exp]	21.33	0.6330
AT5G35980		YAK1	yeast YAK1-related gene 1 (.1....		Potri.013G075300 [exp]	22.22	0.6110

Compare expression of checked genes

Potri.006G225100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.