Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12000 749 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G26150 714 / 0 protein kinase family protein (.1) AT2G24370 639 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G31230 634 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G16760 607 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G78940 600 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) AT2G07020 596 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G35380 568 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G20200 560 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G17540 446 / 2e-146 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G061600 [exp] 1132 / 0 AT5G12000 714 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G198300 [exp] 655 / 0 AT5G12000 639 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G078500 [exp] 627 / 0 AT2G24370 824 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.018G002400 [exp] 624 / 0 AT2G24370 956 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.007G001900 [exp] 599 / 0 AT1G78940 757 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.014G001700 [exp] 559 / 0 AT1G78940 783 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170742 [exp] 543 / 0 AT1G78940 786 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G170901 [exp] 376 / 8e-121 AT1G78940 584 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1.2) Potri.004G233000 [exp] 365 / 2e-114 AT4G25160 874 / 0.0 U-box domain-containing protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021596 [exp] 645 / 0 AT2G24370 828 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10040573 [exp] 632 / 0 AT2G24370 815 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026989 [exp] 631 / 0 AT2G24370 1014 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10024212 [exp] 603 / 0 AT2G24370 780 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10026439 [exp] 571 / 0 AT5G12000 662 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020185 [exp] 555 / 0 AT2G24370 741 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10027593 [exp] 535 / 0 AT2G24370 665 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10035712 [exp] 529 / 0 AT1G16760 624 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008542 [exp] 535 / 2e-180 AT2G24370 823 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10037298 [exp] 527 / 6e-177 AT1G16760 820 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00582 [poplar] [flax] Usp Universal stress protein family CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.006G225300.3 pacid=42767685 polypeptide=Potri.006G225300.3.p locus=Potri.006G225300 ID=Potri.006G225300.3.v4.1 annot-version=v4.1 ATGCCTTCCAATGCCACAGCTGATGACAATGGTGATTCACTCTTCAATGCCACTGCTGTAGCAATTGACAAAGACAAGAACAGCCAGCATGCTTTTCGTT GGGCTGTTGATAATTTCGCAAGAAATAACCCGGTTATTGTCCTAATTCATGTCAAGCACAAAAACCATCAATATAAAGTTGCTGATGGTCAGGCTGACGA GGCTGAGGAGGTGCAGCAGCTTTTCACTTCCTCCCGTGGATATTGTGCCCGTAAAGGGGTTCGTTTAAAGCAGGTAGCACTAGATCACATTGATGTTGCC CAGGCGGTTGCGGACTACATCAACAGCAGTTTAATTGGAAATATTGTTCTGGGTGCATCAGGAAGAAATGTTCTTACAAGGAAATTCAAAAACCAAGATG TGCCAACTAGCTTAATGAAAATTGCCCCGGATTTTTGTTCTGTTTATGTAATCACTAAAGGAAAGATCCTCTCTTCCAAAAAAGCACAACGAATGCCTCC TTCTAGTGCACCGCAAAAGACACCATCTATGCCAGCAGTTTCATCTCGAAGTCAGCAGGATAATGCTGAACTAGATTCAGATGGAGTTAGAGCACAGACA AGGAAGAGAGAGTGTAGAAGTACAGAACCAGGTGGATTTCCTTCGGACAAGGTCCATGATCTCATTAGAGAACCACAACATGAGGGAGGAAGAAAGCCCA TTTCTAATTTCTCAATGGAAAGCACTGACCCTCCCTTCTCTGCCGGAAGACTCTCAACTTTCCGTTATTCTACATCTGATGCATCTCAAAATACAGGGAC ATTCGCGTTGGCAATCATGGACAGCTCGGCCCAAGGTTTAGATAAGTCTATTGCTTCAGCCTCCTCTCTGAACGAGTCAAACGCAGACTTCTTAGAAGCT GAGATGAGAAGACTGAGGCTTGAGCTGAAGCAGACCATGGCAATGTACAGCACAGCTTGCAAAGAAGCACTTTCAGCCAAAAAAAAGGCTACTGAACTTA ATCAATGGAAGGTTGACGAGGTTCGTAAGTTTGAGGAAACCAAGCTCGCAGGAGAGGCAGCTCTTGCCATGGCAGAGCTGGAGAAGGCCAAGTGCAGAGT TGCCATTGAAGCAGCTGAGAAATCACAGAAACTAGCAGAGATGGAAGCTCGGAAAAGAAAGCAGGCGGAGATGAAAGCTGAGCGAGAGACAGGGGAGAAG AATCGTGCTTTGAATGCTTTGGCACACAATGATGTACGGTACAGAAGATACACTATTGAAGAGATTGAAGAAGCCACGGATAAATTCTCACCATCAAATA AAATTGGTGAAGGAGGATATGGACCTGTGTATAAAGGCAAACTTGATCATACCCCGGTTGCCATCAAGGCTTTAAGACCTGGAGCTGCTCAAGGGAAGAA GCAGTTCCAACAGGAGGTTGAGGTTCTCAGCACCATTAGACACCCACACATGGTCCTTCTTCTTGGTGCCTGCCCTGAGTATGGAGTCTTGATATATGAA TGCATGGACAACGGAAGCTTGGAAGACAGGCTGCTTCAAAAAGACAACACCCCTCCAATTCCATGGAGCACACGATTCAAAATAGCTGCTGAGATTGCCA CAGCCCTTCTTTTCCTCCACCAAACAAAGCCAGAGCCCCTTGTCCACCGGGACCTTAAGCCAGCAAATATTCTTTTAGACCGTAACTATGTGAGCAAAAT TAGTGATGTTGGCCTTGCTCGTTTAGTCCCTCCTTCTATAGCTGATAGTGTCACACAATACCACATGACCTCAGCTGCAGGTACATTTTGTTATATAGAT CCCGAGTATCAACAAACAGGAATGTTAACTACAAGATCAGACATTTACTCAATGGGAATAATGTTACTCCAAATCATCACGGCCAAGCCTCCGATGGGTC TTGCACATCAGGTGGGGAGGGCCATTGAAAGAGGAGGATTTTCGGACATGCTTGACCACACAGTATCGGACTGGCCTGTGGAAGAGGCGTTAAGATTTGC TATACTGGCATTGAAGTGTGCTGAACTAAGGAAGAGAGACAGGCCAAGTCTTGCCACAGTTATAGTGCCAGAACTTAACCGGTTGAGAGACTTTGGAATG AACTCAGAACAGCAGCAGAGCCGTGGAGTAAGCAGCAGAGGTCGTAGTTGCAGTCCTCTTCCACAACCTACGTCACCTTTACAGGCAAGGATGTCGAATG CAACTCAGGAGAAAGCACGTACGTCCTGTAGAGGGAGAACTGAACAAGGTTCTAATCAGGGAGAGGCCGACGGCCAAGAAAGTTAA
AA sequence Show only first row Show all	>Potri.006G225300.3 pacid=42767685 polypeptide=Potri.006G225300.3.p locus=Potri.006G225300 ID=Potri.006G225300.3.v4.1 annot-version=v4.1 MPSNATADDNGDSLFNATAVAIDKDKNSQHAFRWAVDNFARNNPVIVLIHVKHKNHQYKVADGQADEAEEVQQLFTSSRGYCARKGVRLKQVALDHIDVA QAVADYINSSLIGNIVLGASGRNVLTRKFKNQDVPTSLMKIAPDFCSVYVITKGKILSSKKAQRMPPSSAPQKTPSMPAVSSRSQQDNAELDSDGVRAQT RKRECRSTEPGGFPSDKVHDLIREPQHEGGRKPISNFSMESTDPPFSAGRLSTFRYSTSDASQNTGTFALAIMDSSAQGLDKSIASASSLNESNADFLEA EMRRLRLELKQTMAMYSTACKEALSAKKKATELNQWKVDEVRKFEETKLAGEAALAMAELEKAKCRVAIEAAEKSQKLAEMEARKRKQAEMKAERETGEK NRALNALAHNDVRYRRYTIEEIEEATDKFSPSNKIGEGGYGPVYKGKLDHTPVAIKALRPGAAQGKKQFQQEVEVLSTIRHPHMVLLLGACPEYGVLIYE CMDNGSLEDRLLQKDNTPPIPWSTRFKIAAEIATALLFLHQTKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPPSIADSVTQYHMTSAAGTFCYID PEYQQTGMLTTRSDIYSMGIMLLQIITAKPPMGLAHQVGRAIERGGFSDMLDHTVSDWPVEEALRFAILALKCAELRKRDRPSLATVIVPELNRLRDFGM NSEQQQSRGVSSRGRSCSPLPQPTSPLQARMSNATQEKARTSCRGRTEQGSNQGEADGQES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G12000			Protein kinase protein with ad...		Potri.006G225300 [exp]	0	1
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Potri.003G195150 [exp]	3.60	0.6321
AT3G20190			Leucine-rich repeat protein ki...		Potri.014G002700 [exp]	12.04	0.5743
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Potri.017G088401 [exp]	13.19	0.5205
AT5G28780			PIF1 helicase (.1)		Potri.012G073100 [exp]	14.96	0.5391
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Potri.009G032900 [exp]	38.07	0.5274
AT1G40390			DNAse I-like superfamily prote...		Potri.014G186733 [exp]	39.47	0.5067
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Potri.015G143500 [exp]	39.94	0.5710
AT5G48890	C2H2ZnF	LATE	LATE FLOWERING, C2H2-like zinc...		Potri.002G238700 [exp]	43.95	0.5227
AT3G20240			Mitochondrial substrate carrie...		Potri.010G253600 [exp]	52.99	0.5265
AT2G42590		GENERALREGULATO...	general regulatory factor 9 (....		Potri.001G125600 [exp]	58.58	0.4169	GF14.2

Compare expression of checked genes

Potri.006G225300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.