Plant FIBer expression Database

Potri.006G225400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G225400.1 pacid=42767166 polypeptide=Potri.006G225400.1.p locus=Potri.006G225400 ID=Potri.006G225400.1.v4.1 annot-version=v4.1
ATGCAACTACAAGAGATGGGCTATCTCAATGGTCCGCTAACATCTCCAAGAGGAAGATGGTTTACCTTGTTTTTCAAGATAGTGATTGTGTTGGAGATGG
TCATGTTTGCTAGAGCAAACTCTGATGCTGATCCAATGGGAGAACCTGCGGCGGGTTTACTTTGCATAAGTGATTGTGTTACATGTCCAGTCATATGTTC
ACCACCTCCTCCACCACTCCTCGACTATCCATCACCACCATCCCGCCACTCTCCATCTCCTCAACATTCCTACCACTCCCCACCACCGCAGCCGCCGCCA
CCTACATCACCACCCCCATCACCACCAGCTTATCATTCACCACCGCGGTCCCCACAAGCACCGTCATGGTATCCTATATGGGGCACTCCTCCACCCCCTG
TTTATCATTTCAACACTCCTAACGGCCAAGCACCCCCTGCAAAGGGACTGTACCCCTATCCTTACTACTACTACTATTCCTCAAAGGCCTCTTCTTTTTC
TCTCCATGCTTCCCATTTCTTTTTATTGGGAGTCATCCATGTTGTCTACTTCCTGTTCTAG
AA sequence
>Potri.006G225400.1 pacid=42767166 polypeptide=Potri.006G225400.1.p locus=Potri.006G225400 ID=Potri.006G225400.1.v4.1 annot-version=v4.1
MQLQEMGYLNGPLTSPRGRWFTLFFKIVIVLEMVMFARANSDADPMGEPAAGLLCISDCVTCPVICSPPPPPLLDYPSPPSRHSPSPQHSYHSPPPQPPP
PTSPPPSPPAYHSPPRSPQAPSWYPIWGTPPPPVYHFNTPNGQAPPAKGLYPYPYYYYYSSKASSFSLHASHFFLLGVIHVVYFLF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.006G225400
[exp]
0 1
AT1G79480 Carbohydrate-binding X8 domain... Potri.008G082900
[exp]
2.00 0.9543
AT1G60030 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBA... Potri.008G146400
[exp]
3.46 0.9364
AT1G69970 CLE26 CLAVATA3/ESR-RELATED 26 (.1.2) Potri.010G039800
[exp]
3.46 0.9335
AT1G71692 MADS XAL1, AGL12 XAANTAL1, AGAMOUS-like 12 (.1) Potri.019G076800
[exp]
6.00 0.9170 AGL12.1
AT3G24770 CLE41 CLAVATA3/ESR-RELATED 41 (.1) Potri.012G019400
[exp]
6.85 0.8902
AT1G77700 Pathogenesis-related thaumatin... Potri.005G173900
[exp]
6.92 0.9354
AT5G04080 unknown protein Potri.006G043300
[exp]
8.36 0.9154
AT3G18260 Reticulon family protein (.1) Potri.015G044300
[exp]
8.48 0.9235
AT5G60200 DOF TMO6, AtDof5,3 TARGET OF MONOPTEROS 6 (.1) Potri.005G134200
[exp]
8.66 0.9062
AT2G37590 DOF AtDof2. 4, ATDO... DNA binding with one finger 2.... Potri.006G084200
[exp]
9.48 0.9207 Pt-DOF2.3

Potri.006G225400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.