Plant FIBer expression Database

Potri.006G225500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11980 890 / 0 conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024994
[exp]
898 / 0 AT5G11980 881 / 0.0 conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
Lus10026437
[exp]
894 / 0 AT5G11980 894 / 0.0 conserved oligomeric Golgi complex component-related / COG complex component-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0295 Vps51 PF04124 Dor1 Dor1-like family
Representative CDS sequence
>Potri.006G225500.2 pacid=42768498 polypeptide=Potri.006G225500.2.p locus=Potri.006G225500 ID=Potri.006G225500.2.v4.1 annot-version=v4.1
ATGGAGATAACAGAAAACGGACAAGACATGTCATCGGCGGTTACGAGTCTCCTCCCTCTCGCCTCCGTTTCTCAACAACCTTACGTATCTGAGCTTCTCT
CATTCACTCTCGATCGCCTCCACAAAGAGCCGGAGTTACTTCGGGTAGATGCGGAGAGAATACAGAGGCAAATGCAGGAGGTAGCGGTGGTGAATTACCG
TGCCTTTATTGCAGCGGCTGATGCTTTGCTTGCTATTCGACAACAAGTTTCTTCTATTGATAACCACCTTGAATCTCTGATAACTGAGATCCCAAAGCTG
ACATCTGGTTGCACCGAGTTCATTGAATCTGCAGAAGAGATTTTGGAGAAGAGGAAGATGAACCAAACATTGCTAGCAAACCATAGTACATTGCTTGATT
TGCTTGAAATCCCTCAACTTATGGACACGTGTGTAAGGAATGGAAATTATGATGAAGCCCTTGACTTGGAAGCATTTGTTTGCAAACTGTCAACCATGCA
CCCCAAATTGCCTGTTATTCAAGCACTGGCTGCAGAAGTTAGGCAGACCACCCAATCTCTTCTTTCTCAGCTTCTTCAGAAACTTCGCTCTAATATTCAG
CTGCCTGAATGCCTCCGAATTATTGGATATTTACGTCGCATAGGGGTATTTAGTGAGTACGAAATGCGTTTGCAGTTTCTGAGATGTCGCGAGGCATGGC
TTACTGGTATTCTTGAGGATCTGGACCAACGGAATGCTTATGAGTACTTGAAAGGGATGATAAATTGCCATAGAACACATCTTTTCGATGTTGTTAACCA
ATATCGAGCAATATTTGCTGATGATACCTCAGGGAGTGAAGAAAATTATGATGGTGGACTTCTTTTTAGTTGGGCTATGCATCAGATTACCTCACACCTT
AAAACACTTAAAATCATGCTCCCAAAGATAACCGAGGGTGGGTCTCTGTCAAATATTCTCGACTCATGCATGTATTGTGCAGTGGGACTTAATTGGGTTG
GGCTGGATTTTAGGGGCTTGCTTCCACCTCTTTTTGAGGAGGCAGTTCTTAATTTATTCTCTAAGAATATGAATACAGCAGTTGAGAATTTTCAGCTAGT
TTTGGATTCACATCGCTGGGTTCCATTACCAGCAGTTGGTTTTCCATCATATAGCATTGGTGAAGAACAACAAGAGGATGTGACCCCACCATCTTATCTT
ATGGAACATCCACCTCTTGCAGTGTTCATTAATGGTGTATCTGCTGCAATGAATGAGCTACGTCCTTGTGCCCCAGTAAGTTTGAAGCATGTGCTTGCTC
AAGAACTGATTAAGGGATTGCAGGCTGTTTCCGATTCTCTATTGAGATATAATGCAACTCGGATGCTCAGAGACAATGAATCTGGACTTTTTCTCTCACT
TTGCCGGTCATTCATAGAGGTTGCTTACCCACATTGTGCCACATGCTTTGGTCGCTGTTACCCAGGTGGAGCTGCTCTTATTATGGATGCGAAGAACTTG
TATGATGGAGTTGGCCGTTTGCTGGCAACTTCTTCTAGAGAGCTGCAAAGACCTGCCAATAACACAGAGGGAAAGAAGATAACAGAAAATGGGGACCAGC
TTGTGGTGGAAAATGGGGTTACTCCAGAGGTAGAACCATCAGGGGTTGCTATTGCCGATGAAAAGGATCAGATAAGCCCAACTGTACAAATTGATGAAAA
GCAAGGTGATTCTGTAGCATCTGTGTGA
AA sequence
>Potri.006G225500.2 pacid=42768498 polypeptide=Potri.006G225500.2.p locus=Potri.006G225500 ID=Potri.006G225500.2.v4.1 annot-version=v4.1
MEITENGQDMSSAVTSLLPLASVSQQPYVSELLSFTLDRLHKEPELLRVDAERIQRQMQEVAVVNYRAFIAAADALLAIRQQVSSIDNHLESLITEIPKL
TSGCTEFIESAEEILEKRKMNQTLLANHSTLLDLLEIPQLMDTCVRNGNYDEALDLEAFVCKLSTMHPKLPVIQALAAEVRQTTQSLLSQLLQKLRSNIQ
LPECLRIIGYLRRIGVFSEYEMRLQFLRCREAWLTGILEDLDQRNAYEYLKGMINCHRTHLFDVVNQYRAIFADDTSGSEENYDGGLLFSWAMHQITSHL
KTLKIMLPKITEGGSLSNILDSCMYCAVGLNWVGLDFRGLLPPLFEEAVLNLFSKNMNTAVENFQLVLDSHRWVPLPAVGFPSYSIGEEQQEDVTPPSYL
MEHPPLAVFINGVSAAMNELRPCAPVSLKHVLAQELIKGLQAVSDSLLRYNATRMLRDNESGLFLSLCRSFIEVAYPHCATCFGRCYPGGAALIMDAKNL
YDGVGRLLATSSRELQRPANNTEGKKITENGDQLVVENGVTPEVEPSGVAIADEKDQISPTVQIDEKQGDSVASV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G11980 conserved oligomeric Golgi com... Potri.006G225500
[exp]
0 1
AT4G31480 Coatomer, beta subunit (.1.2) Potri.018G007400
[exp]
1.00 0.9836
AT5G05010 clathrin adaptor complexes med... Potri.015G125400
[exp]
1.41 0.9760
AT5G10840 Endomembrane protein 70 protei... Potri.006G264500
[exp]
2.44 0.9702
AT1G30630 Coatomer epsilon subunit (.1) Potri.011G155800
[exp]
2.82 0.9672 COPE2.1
AT5G60020 LAC17, ATLAC17 laccase 17 (.1) Potri.006G087500
[exp]
3.16 0.9635 LAC110c
AT4G23460 Adaptin family protein (.1) Potri.003G130400
[exp]
4.89 0.9592
AT5G18520 Lung seven transmembrane recep... Potri.016G081300
[exp]
4.89 0.9479
AT5G33320 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE ... Potri.015G077900
[exp]
6.48 0.9275
AT1G60070 Adaptor protein complex AP-1, ... Potri.006G092800
[exp]
6.92 0.9359
AT2G32510 MAPKKK17 mitogen-activated protein kina... Potri.002G228200
[exp]
7.41 0.9221

Potri.006G225500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.