Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26200 740 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G54650 134 / 5e-35 Methyltransferase family protein (.1.2) AT2G26810 72 / 5e-14 Putative methyltransferase family protein (.1.2.3) AT1G08125 56 / 3e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G73320 54 / 9e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G35987 45 / 6e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044300 [exp] 117 / 4e-29 AT1G54650 376 / 2e-131 Methyltransferase family protein (.1.2) Potri.009G068400 [exp] 73 / 3e-14 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.009G006800 [exp] 56 / 4e-08 AT1G08125 370 / 4e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.017G153900 [exp] 52 / 3e-07 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G148200 [exp] 50 / 1e-06 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024993 [exp] 810 / 0 AT2G26200 726 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006576 [exp] 136 / 9e-36 AT1G54650 381 / 1e-133 Methyltransferase family protein (.1.2) Lus10005515 [exp] 65 / 3e-11 AT1G54650 212 / 4e-67 Methyltransferase family protein (.1.2) Lus10021425 [exp] 58 / 7e-09 AT1G08125 385 / 2e-135 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10031894 [exp] 49 / 7e-06 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10041898 [exp] 45 / 0.0002 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10028446 [exp] 44 / 0.0002 AT4G35987 402 / 6e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10026822 [exp] 44 / 0.0003 AT2G26810 267 / 5e-87 Putative methyltransferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08242 [poplar] [flax] Methyltransf_12 Methyltransferase domain CL0063 [poplar] [flax] NADP_Rossmann PF10294 [poplar] [flax] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.006G225600.1 pacid=42768581 polypeptide=Potri.006G225600.1.p locus=Potri.006G225600 ID=Potri.006G225600.1.v4.1 annot-version=v4.1 ATGGAATCCAATGTGGAACAGCAAAGCCCATCTCAGAAATTTCAAATATACTCTACTGCTAACACTGGTGTCACTCCCTTCTGGAGAGAAAAGTATGAAA GGGATGCTAAGAAGTATTGGGATGTTTTTTACAAGCGACACCAAGACAAATTTTTTAAGGACCGTCATTACTTGGACAAGGAATGGGGTCAATATTTTGC AGGCGAAGAAAGAAGAGTTGTTCTTGAGGTTGGCTGTGGAGCTGGGAACACCATTTTTCCTCTTGTTGCTACCTACCCTAATATTTTTGTCCATGCATGT GATTTCTCACCGCGTGCTGTTAACTTAGTTAAGACTCATAAAGACTACTTAGAGAGATGTGTTGGTGCATTCGTATGCGATCTGACTGTTGATGACTTGA GCAAAGAGATTTCTCCATCTTCAGTTGATATCGTGACAATGATATTTGTGTTATCTGCAGTGTCCCCTGAGAAGATGCCTCTAGTCCTGCAAAACATTAA AAAAGTAATGAAGCCTAATGGTTATGTGCTGCTTCGTGACTATGCTGTAGGGGACCTTGCTCAGGAAAGATTAACTAGCAAGGATCAACAGATTAGTGAA AACTTTTATGTCAGGGGTGATGGCACTCGTGCTTTCTATTTTTCAAATGAATTCTTGACAAGTTTGTTTAAAGATAATGGATTTGATGTTGAAGAACTTG GTTTGTGCTGCAAGCAAGTTGAGAATCGGTCACGTGAAATAGTGATGAATAGGCGTTGGATCCAAGCTGTATTCCGATTTTCAGACAGCTCAAACTATTC TGTTAGCAAAGAATCTGCAATCAAGGAAGCCCTCTGTCAAGAAAATGTAAAGTCTAATGTCAAGGAAAGCACATCACAGTGCCCTTCAAACAATTTTGAG ATCGATATGTCTGAGGGTGTGGCATCTGAAATGTTTGGAATTTCTCCTTCCAATGATAATGAGGTGATTCACGTTGACCTCAGGGACCAGAATTTCAAGA TTAATGTTCTGTCAAAAGAGTATCAGCATACTTGTAAATCAACAGGATTGATGCTCTGGGAATCAGCTCGTATGATGGCTATGGTGCTAGCAGTAAATCC AACTATTGTTGAGGGGAGAAAGGTGTTAGAGTTGGGGTGTGGCTGTGGGGGTATATGCTCAATGGTTTCAGCCAAATCAGCTGACCTTGTAGTGGCTACT GATGGGGACACAAAAGCACTTGAACTGTTGTCCCAGAATGTTGCTTCTAACCTTAGACAGCCATCCCTTGCAAAGCTAATTATGAAGAGATTGGTGTGGG GAAATACAGAACATATAGAAGCCATCAAGGATCTCAATCCTGGAGGCTTTGAAGTCATAATTGGCACAGATGTTACATACATTCCTGAAGCTATTCTGCC CTTGTTTGCCACTGCAAAGGAATTAATTTCATGTGACAGAAATGGTGGAGACCAGGAACCAGCTCTAATTCTCTGCCATATCTTTCGCCGAGTCGATGAA CCATCGTTACTTTCAGCTGCATCTCAATATGGTTTTAAGTTGGTTGACAAATGGCCATTAGGAATTCCATCTAATCCATCTCAAAGCATTGTAGGCTCTT GGTTCCCAGAGAATGGTCGTGAGGAGTACATCCCAAATGCAGCATTGAACATCATGTACTTCCACTTGCAGTGA
AA sequence Show only first row Show all	>Potri.006G225600.1 pacid=42768581 polypeptide=Potri.006G225600.1.p locus=Potri.006G225600 ID=Potri.006G225600.1.v4.1 annot-version=v4.1 MESNVEQQSPSQKFQIYSTANTGVTPFWREKYERDAKKYWDVFYKRHQDKFFKDRHYLDKEWGQYFAGEERRVVLEVGCGAGNTIFPLVATYPNIFVHAC DFSPRAVNLVKTHKDYLERCVGAFVCDLTVDDLSKEISPSSVDIVTMIFVLSAVSPEKMPLVLQNIKKVMKPNGYVLLRDYAVGDLAQERLTSKDQQISE NFYVRGDGTRAFYFSNEFLTSLFKDNGFDVEELGLCCKQVENRSREIVMNRRWIQAVFRFSDSSNYSVSKESAIKEALCQENVKSNVKESTSQCPSNNFE IDMSEGVASEMFGISPSNDNEVIHVDLRDQNFKINVLSKEYQHTCKSTGLMLWESARMMAMVLAVNPTIVEGRKVLELGCGCGGICSMVSAKSADLVVAT DGDTKALELLSQNVASNLRQPSLAKLIMKRLVWGNTEHIEAIKDLNPGGFEVIIGTDVTYIPEAILPLFATAKELISCDRNGGDQEPALILCHIFRRVDE PSLLSAASQYGFKLVDKWPLGIPSNPSQSIVGSWFPENGREEYIPNAALNIMYFHLQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26200			S-adenosyl-L-methionine-depend...		Potri.006G225600 [exp]	0	1
AT1G14060			GCK domain-containing protein ...		Potri.013G099100 [exp]	2.00	0.7466
AT2G37500			arginine biosynthesis protein ...		Potri.012G115900 [exp]	2.23	0.7443
AT4G28450			nucleotide binding;protein bin...		Potri.007G137300 [exp]	5.29	0.7582
AT3G26750			unknown protein		Potri.007G019800 [exp]	8.30	0.6753
AT5G59740			UDP-N-acetylglucosamine (UAA) ...		Potri.001G234800 [exp]	8.36	0.6564
AT1G60080			3'-5'-exoribonuclease family p...		Potri.006G051200 [exp]	12.24	0.7536
AT2G15910			CSL zinc finger domain-contain...		Potri.009G109100 [exp]	13.00	0.7025
AT3G21540			transducin family protein / WD...		Potri.006G121100 [exp]	13.11	0.7579
AT4G13850		ATGRP2, GR-RBP2	glycine rich protein 2, glycin...		Potri.001G319900 [exp]	16.00	0.7235
AT3G56570			SET domain-containing protein ...		Potri.004G135700 [exp]	17.74	0.7242

Compare expression of checked genes

Potri.006G225600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.