Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	TIF4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13920 797 / 0 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 792 / 0 EIF4A-2 eif4a-2 (.1.2) AT1G72730 766 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT3G19760 513 / 0 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G51380 461 / 4e-162 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 283 / 1e-90 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT4G00660 281 / 3e-90 ATRH8 RNAhelicase-like 8 (.1.2) AT2G45810 280 / 2e-89 DEA(D/H)-box RNA helicase family protein (.1) AT5G11170 246 / 3e-77 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G11200 246 / 3e-77 DEAD/DEAH box RNA helicase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G061050 [exp] 836 / 0 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 806 / 0 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 798 / 0 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.005G093900 [exp] 508 / 2e-180 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.007G070000 [exp] 507 / 5e-180 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.002G157500 [exp] 285 / 2e-91 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 283 / 5e-91 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.018G028600 [exp] 245 / 6e-77 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.006G253100 [exp] 243 / 4e-76 AT5G11170 808 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017153 [exp] 770 / 0 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10006878 [exp] 768 / 0 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10037620 [exp] 766 / 0 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10021583 [exp] 562 / 0 AT3G13920 540 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10017407 [exp] 516 / 0 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 506 / 2e-179 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10040975 [exp] 370 / 2e-127 AT3G19760 494 / 1e-176 eukaryotic initiation factor 4A-III (.1) Lus10017804 [exp] 282 / 2e-90 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10014783 [exp] 281 / 5e-90 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 276 / 4e-88 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.006G225700.1 pacid=42768899 polypeptide=Potri.006G225700.1.p locus=Potri.006G225700 ID=Potri.006G225700.1.v4.1 annot-version=v4.1 ATGGCTAGTTCGGCACCTGAAGGATCCCAGTTTGATGCTCGTCAATTTGATTCTAGGATGAATGAGCTGCTCACAGCTGAAGGACAGGATTTCTTTACCT CCTATGATGAGGTGCATGAAACTTTTGATGCTATGAATTTGAAGGAGAACCTTCTGAGGGGTATTTACGCATATGGTTTTGAGAAGCCATCTGCAATTCA GCAAAGAGGGATTGTCCCATTCTGCAAGGGACTTGATGTAATCCAACAAGCACAATCAGGAACTGGAAAGACAGCTACGTTTTGCTCTGGGATTTTGCAG CAGCTTGATTATGATATAGTTGAATGCCAAGCATTGGTTCTTGCACCTACCCGAGAACTAGCTCAACAGATTGAAAAGGTTATGAGAGCACTAGGTGATT ATCTGGGTGTGAAGGTTCATGCTTGTGTTGGTGGAACCAGTGTTCGTGAGGATCAGCGTATTCTCTCAGCTGGGGTTCATGTTGTAGTCGGTACTCCTGG TCGTGTGTTTGACATGTTGCGGAGACAATCACTTCGCCCTGACTATATCAAGATGTTTGTATTGGATGAAGCAGATGAAATGCTCTCAAGAGGATTCAAG GATCAGATATATGATATTTTCCAATTACTGCCCCCAAAGATTCAGGTTGGGGTCTTCTCTGCTACTATGCCACCTGAGGCCCTAGAAATTACGAGGAAGT TCATGAATAAACCTGTGAGGATTTTAGTGAAGCGTGATGAGCTTACCCTTGAGGGTATCAAGCAATTCTATGTTAATGTTGACAAGGAGGAATGGAAGCT TGAGACACTTTGTGATCTATATGAGACCTTGGCAATAACCCAAAGTGTTATCTTTGTGAACACCAGGCGCAAGGTGGATTGGCTCACAGACAAGATGCGC AGTCGTGATCACACAGTCTCTGCCACTCATGGAGATATGGACCAAAACACAAGGGACATTATTATGCGAGAATTCCGCTCTGGTTCCTCTCGTGTGCTGA TCACTACTGATCTGTTGGCCCGTGGTATTGATGTCCAGCAAGTCTCACTTGTGATCAATTATGATCTCCCTACCCAGCCAGAGAACTACCTCCATCGTAT TGGTCGTAGTGGACGTTTTGGAAGGAAGGGTGTTGCTATAAACTTTGTTACCAGGGATGATGAAAGAATGCTTTCTGACATCCAGAGATTCTATAATGTA ACGGTTGAGGAGCTGCCATCAAATGTTGCTGATCTTCTTTGA
AA sequence Show only first row Show all	>Potri.006G225700.1 pacid=42768899 polypeptide=Potri.006G225700.1.p locus=Potri.006G225700 ID=Potri.006G225700.1.v4.1 annot-version=v4.1 MASSAPEGSQFDARQFDSRMNELLTAEGQDFFTSYDEVHETFDAMNLKENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQ QLDYDIVECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFK DQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMR SRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLSDIQRFYNV TVEELPSNVADLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.006G225700 [exp]	0	1	TIF4.1
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.005G146800 [exp]	2.82	0.9109
AT2G03120		ATSPP	signal peptide peptidase (.1)		Potri.001G276700 [exp]	3.46	0.9092
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.017G092400 [exp]	6.00	0.9058
AT5G08690			ATP synthase alpha/beta family...		Potri.010G116600 [exp]	7.07	0.9033	PtrAtpB_1,ATP.1
AT2G20420			ATP citrate lyase (ACL) family...		Potri.014G195700 [exp]	8.94	0.8878
AT5G55070			Dihydrolipoamide succinyltrans...		Potri.011G089200 [exp]	10.19	0.8844
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G031000 [exp]	10.48	0.8878	RPT1.3
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.001G376500 [exp]	10.77	0.9047
AT3G26340			N-terminal nucleophile aminohy...		Potri.010G058100 [exp]	12.04	0.8677	PBE1.1
AT1G20200		HAP15, EMB2719	HAPLESS 15, EMBRYO DEFECTIVE 2...		Potri.004G176600 [exp]	13.11	0.8558

Compare expression of checked genes

Potri.006G225700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.