Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11970 91 / 1e-24 Protein of unknown function (DUF3511) (.1) AT2G19460 74 / 9e-18 Protein of unknown function (DUF3511) (.1) AT1G72720 67 / 4e-15 Protein of unknown function (DUF3511) (.1) AT3G05725 64 / 5e-14 Protein of unknown function (DUF3511) (.1) AT2G47480 63 / 1e-13 Protein of unknown function (DUF3511) (.1) AT3G62640 59 / 6e-12 Protein of unknown function (DUF3511) (.1) AT3G13910 56 / 4e-11 Protein of unknown function (DUF3511) (.1) AT4G09890 51 / 2e-09 Protein of unknown function (DUF3511) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G197700 [exp] 92 / 7e-25 AT2G19460 78 / 1e-19 Protein of unknown function (DUF3511) (.1) Potri.003G043600 [exp] 89 / 1e-23 AT5G11970 89 / 5e-24 Protein of unknown function (DUF3511) (.1) Potri.006G147700 [exp] 80 / 4e-20 AT2G19460 96 / 2e-26 Protein of unknown function (DUF3511) (.1) Potri.014G123600 [exp] 63 / 1e-13 AT2G47480 93 / 5e-26 Protein of unknown function (DUF3511) (.1) Potri.005G195800 [exp] 57 / 2e-11 AT4G09890 81 / 1e-21 Protein of unknown function (DUF3511) (.1) Potri.002G065200 [exp] 56 / 2e-11 AT4G09890 84 / 9e-23 Protein of unknown function (DUF3511) (.1) Potri.007G077500 [exp] 53 / 6e-10 AT4G09890 80 / 3e-21 Protein of unknown function (DUF3511) (.1) Potri.005G019900 [exp] 50 / 3e-09 AT3G05725 63 / 3e-14 Protein of unknown function (DUF3511) (.1) Potri.013G010600 [exp] 50 / 4e-09 AT2G47480 54 / 5e-11 Protein of unknown function (DUF3511) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027629 [exp] 91 / 2e-24 AT2G19460 110 / 2e-32 Protein of unknown function (DUF3511) (.1) Lus10011939 [exp] 85 / 4e-22 AT2G19460 109 / 6e-32 Protein of unknown function (DUF3511) (.1) Lus10017155 [exp] 83 / 4e-21 AT5G11970 93 / 1e-25 Protein of unknown function (DUF3511) (.1) Lus10021581 [exp] 82 / 7e-21 AT5G11970 97 / 4e-27 Protein of unknown function (DUF3511) (.1) Lus10008471 [exp] 81 / 2e-20 AT2G19460 95 / 1e-26 Protein of unknown function (DUF3511) (.1) Lus10006019 [exp] 77 / 5e-19 AT2G19460 88 / 9e-24 Protein of unknown function (DUF3511) (.1) Lus10010929 [exp] 57 / 1e-11 AT3G05725 71 / 3e-17 Protein of unknown function (DUF3511) (.1) Lus10031405 [exp] 57 / 1e-11 AT3G05725 71 / 6e-17 Protein of unknown function (DUF3511) (.1) Lus10033529 [exp] 52 / 8e-10 AT4G09890 70 / 2e-17 Protein of unknown function (DUF3511) (.1) Lus10020842 [exp] 53 / 1e-09 AT4G09890 69 / 2e-16 Protein of unknown function (DUF3511) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12023 [poplar] [flax] DUF3511 Domain of unknown function (DUF3511)
Representative CDS sequence Show only first row Show all	>Potri.006G225900.2 pacid=42770191 polypeptide=Potri.006G225900.2.p locus=Potri.006G225900 ID=Potri.006G225900.2.v4.1 annot-version=v4.1 ATGGAAGATTACAACAGATCAAAATCGTATTCTTATTCTCATGGGAATGATATGATGCAGATGGAGAGTTATAATGGTCCACAAAGGCCACCAACTTCTT CTTATGAGCTCAGGTCCTATAGCACTTCCTACGCTCAGACTCAGGTGGCCAACGGCAACTATAACACCAACAATTTCGGCAACAACAGGGACTTTAAGGC TAAGAAAGGAAAGGGCTATACTGGTTCATCTTCTTCGAAGTCTTGGAGCTTTGATGATCCTGAGTTTCAAAGGAAGAAGAGGGTTGCTAGCTATAAAATG TATAGTGTTGAAGGTAAAGTGAAAGGGACTTTCAGGAAGAGCTTCAGGTGGATTAAAGATAGGTGCACACAAGTGATGTATGGATGGTGGTGA
AA sequence Show only first row Show all	>Potri.006G225900.2 pacid=42770191 polypeptide=Potri.006G225900.2.p locus=Potri.006G225900 ID=Potri.006G225900.2.v4.1 annot-version=v4.1 MEDYNRSKSYSYSHGNDMMQMESYNGPQRPPTSSYELRSYSTSYAQTQVANGNYNTNNFGNNRDFKAKKGKGYTGSSSSKSWSFDDPEFQRKKRVASYKM YSVEGKVKGTFRKSFRWIKDRCTQVMYGWW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11970			Protein of unknown function (D...		Potri.006G225900 [exp]	0	1
AT2G39700		ATHEXPALPHA1.6,...	expansin A4 (.1)		Potri.009G031800 [exp]	3.74	0.8429	Pt-EXPA6.1,PtrEXPA5
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.008G052100 [exp]	6.24	0.8236
AT5G64667		IDL2	inflorescence deficient in abs...		Potri.005G057400 [exp]	9.38	0.8349
AT4G36760		ATAPP1	ARABIDOPSIS THALIANA AMINOPEPT...		Potri.018G145584 [exp]	13.67	0.7819
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Potri.004G175400 [exp]	18.13	0.7444	Pt-ATFP6.1
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.013G025900 [exp]	20.85	0.8180
AT5G59350			unknown protein		Potri.010G206100 [exp]	23.23	0.8062
AT4G10810			unknown protein		Potri.014G013600 [exp]	24.12	0.8173
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.005G039800 [exp]	27.22	0.7878
AT3G58850		HLH2, PAR2	phy rapidly regulated 2 (.1)		Potri.002G060100 [exp]	30.78	0.7892

Compare expression of checked genes

Potri.006G225900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.