Plant FIBer expression Database

Potri.006G226000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11960 431 / 3e-152 Protein of unknown function (DUF803) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G060500
[exp]
515 / 0 AT5G11960 460 / 1e-163 Protein of unknown function (DUF803) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013530
[exp]
414 / 1e-145 AT5G11960 472 / 2e-168 Protein of unknown function (DUF803) (.1)
Lus10004444
[exp]
413 / 4e-145 AT5G11960 470 / 1e-167 Protein of unknown function (DUF803) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF05653 Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence
>Potri.006G226000.1 pacid=42769931 polypeptide=Potri.006G226000.1.p locus=Potri.006G226000 ID=Potri.006G226000.1.v4.1 annot-version=v4.1
ATGTGGGAATCCATCTGTTTAACGCTGGCAGCCACCGCCGGTAGTAACATCGGCAAAGTTCTTCAAAAGAAGGGCACGGTCATTCTGCCTCCTCTTTCTT
TCAAACTCAAGGTGATAAGGGCATATGCTGCTAATGTAGCTTGGATCATTGGTTTTCTTATGGATATTATTGGTGCATTGTTGATGTTGAAGGCATTGTC
TCTGGCTCCTGTTTCTGTCATCCAACCAGTTTCTGGTTGTGGACTTGCTATTCTTTCTGTCTTTTCCCATTTTTACCTAAAGGAAGTCATGAATGTCATT
GATTGGATGGGGATCACTTTGGCTGGTATTGGTACAATAGGAGTTGGTGCTGGAGGTGAGGAGCAAGAGGCTTCGTCCATATCTATTTTGCAGTTACCTT
GGCTGGCGTTGCTTGTTGCCATCTTGTTTGTAGTTCTCAATGGATGGCTTCGGATGTACAGACGTCAAAGAAGAGCACATGAGACAATGGACTATGAAGT
TGTTGAAGAAATTATATACGGCTTGGAATCTGGCATTTTGTTTGGGATGGCTTCTGTAATATCAAAGATGGGATTTGTCTTCTTGGAGCAGGGCTTCTCC
AAAATGCTAGTTCCTTTATGCCTCACCATCAGTATATGCTGTAGTGCAACAGGATTTTATTACCAGACCCAAGGTCTAAAACATGGAAGGGCAATTGTGT
TGTCTACATGTGCTGCTGTGGCATCAATAGTGACTGGTGTACTTGCTGGAATGCTTGCTCTGGGGGAACGGTTGCCTTCAGCACCAGCTGCCCGTTTTTC
TCTTCTTCTCGGATGGCTGCTTATCGTAGTAGGTGTGATTTTACTTGTGAGTTCAACTTGGCTGTTGCGACACCTTCCACGACCATTGCGTCACTTCACA
AGTAGTGCTGATCGAAATTTCAGTCTGAGTCGATCAGGATCACTCCGACTTAAGGATCCAAACCCAACTGCTGTTATCCATGCAGCAACATTGCATCATT
TGATATCATCTCCATCTAAGGAGAAGGCTTGA
AA sequence
>Potri.006G226000.1 pacid=42769931 polypeptide=Potri.006G226000.1.p locus=Potri.006G226000 ID=Potri.006G226000.1.v4.1 annot-version=v4.1
MWESICLTLAATAGSNIGKVLQKKGTVILPPLSFKLKVIRAYAANVAWIIGFLMDIIGALLMLKALSLAPVSVIQPVSGCGLAILSVFSHFYLKEVMNVI
DWMGITLAGIGTIGVGAGGEEQEASSISILQLPWLALLVAILFVVLNGWLRMYRRQRRAHETMDYEVVEEIIYGLESGILFGMASVISKMGFVFLEQGFS
KMLVPLCLTISICCSATGFYYQTQGLKHGRAIVLSTCAAVASIVTGVLAGMLALGERLPSAPAARFSLLLGWLLIVVGVILLVSSTWLLRHLPRPLRHFT
SSADRNFSLSRSGSLRLKDPNPTAVIHAATLHHLISSPSKEKA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G11960 Protein of unknown function (D... Potri.006G226000
[exp]
0 1
AT4G10050 esterase/lipase/thioesterase f... Potri.019G072900
[exp]
1.00 0.7974
AT5G03250 Phototropic-responsive NPH3 fa... Potri.016G090400
[exp]
4.24 0.7234
AT5G66120 3-dehydroquinate synthase, put... Potri.005G110900
[exp]
5.74 0.7702
AT3G01150 ATPTB1, PTB polypyrimidine tract-binding p... Potri.004G123300
[exp]
8.24 0.6825
AT5G46800 BOU A BOUT DE SOUFFLE, Mitochondri... Potri.003G091500
[exp]
10.58 0.7565 Pt-BOU.2
AT5G12470 Protein of unknown function (D... Potri.009G051800
[exp]
11.83 0.7125
AT1G11790 AtADT1, ADT1 Arabidopsis thaliana arogenate... Potri.011G004700
[exp]
12.40 0.7083
AT5G17920 ATCIMS, ATMETS,... methionine synthesis 1, COBALA... Potri.009G152800
[exp]
23.02 0.7737
AT4G00430 PIP1;4, TMP-C, ... TRANSMEMBRANE PROTEIN C, PLASM... Potri.016G113300
[exp]
27.49 0.6964
AT3G59350 Protein kinase superfamily pro... Potri.017G036300
[exp]
30.72 0.6338

Potri.006G226000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.