Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) AT4G26180 374 / 8e-130 Mitochondrial substrate carrier family protein (.1) AT4G01100 208 / 1e-64 ADNT1 adenine nucleotide transporter 1 (.1.2) AT2G37890 175 / 6e-52 Mitochondrial substrate carrier family protein (.1) AT3G55640 172 / 6e-51 Mitochondrial substrate carrier family protein (.1) AT3G53940 172 / 1e-50 Mitochondrial substrate carrier family protein (.1) AT5G61810 157 / 2e-45 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT3G21390 155 / 2e-44 Mitochondrial substrate carrier family protein (.1) AT4G32400 155 / 1e-43 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G51050 155 / 6e-43 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153600 [exp] 392 / 4e-137 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 204 / 4e-63 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 200 / 2e-61 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G095400 [exp] 197 / 3e-60 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 196 / 5e-60 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.016G103300 [exp] 172 / 9e-51 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 168 / 4e-49 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 167 / 7e-49 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 160 / 2e-46 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013527 [exp] 507 / 0 AT1G14560 428 / 5e-151 Mitochondrial substrate carrier family protein (.1) Lus10032690 [exp] 390 / 6e-136 AT4G26180 493 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10008572 [exp] 389 / 1e-135 AT4G26180 494 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10032365 [exp] 200 / 2e-61 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 197 / 5e-60 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 195 / 3e-59 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 190 / 1e-57 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10004689 [exp] 179 / 3e-53 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 169 / 3e-49 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 164 / 2e-47 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.006G226300.1 pacid=42769396 polypeptide=Potri.006G226300.1.p locus=Potri.006G226300 ID=Potri.006G226300.1.v4.1 annot-version=v4.1 ATGAGTTCCTCGCAAGGGTCCACATTGTCTTCTAATGTCGCCGAGCTGGTTGATGGTTCATCTGCTCACAGGGACGTTTCTTTGCTTGATGATGTGCCTG TTTATGTGAAGGAGCTCATTGCTGGTGGAACCGCTGGAGCATTTGCTAAGACTGTCATCGCACCACTTGAAAGAACTAAAATACTCTTACAGACAAGAAC TGAAGGGTTCCAATCTCTTGGAGTGTTTCAGTCATTGAAGAAACTATTAAAGCATGAGGGAATCCTTGGCTTTTATAAGGGGAATGGAGCCAGTGTTATT CGGATTGTTCCTTATGCGGCCTTACATTTCATGACATATGAGCAATATCGTGTTTGGATCTTGAATAATTGCCCTGCCCTTGGTACAGGGCCTGTGATAG ATCTATTAGCTGGTTCAGTGGCTGGAGGAACAGCTGTTTTATGCACTTACCCTTTAGACCTGGCTCGTACTAAGCTTGCTTATCAGGTTGCGGACACAAG AGGGGATTTCAGGCGTGGCATGAAAAGTATTTGTGCTCAGCCTGCTTATAACGGCATAAAAGATGTACTTACAAGTGTCTACAAGGAAGGGGGAATGCGT GCATTGTATCGAGGAATAGGTCCAACCCTTATTGGAATCCTCCCTTACGCGGGTTTGAAGTTCTATGTTTATGAGGAACTTAAGAGACATGTCCCTGAAG AGCACCAGTCCATTGTGATGCGTCTTTCATGTGGAGCTATTGCAGGGTTATTTGGGCAGACAATTACATACCCATTAGATGTTGTTAGAAGACAGATGCA GGTTGAGAATTTACAACCTTTAAGTCAAGGTAATGCAAGATACAGGAACACATTTGAAGGGCTTTCTACTATAGTCCGCAATCAAGGATGGAAACAGTTA TTTGCTGGGCTGAGCATTAATTATATCAAGATCGTTCCTTCTGTGGCAATTGGCTTCGCTGCATATGACACGATGAAGGTTTGGCTTCGGATTCCACCTC GACAGAAATCTCAATCAATATCTCCTGGATAA
AA sequence Show only first row Show all	>Potri.006G226300.1 pacid=42769396 polypeptide=Potri.006G226300.1.p locus=Potri.006G226300 ID=Potri.006G226300.1.v4.1 annot-version=v4.1 MSSSQGSTLSSNVAELVDGSSAHRDVSLLDDVPVYVKELIAGGTAGAFAKTVIAPLERTKILLQTRTEGFQSLGVFQSLKKLLKHEGILGFYKGNGASVI RIVPYAALHFMTYEQYRVWILNNCPALGTGPVIDLLAGSVAGGTAVLCTYPLDLARTKLAYQVADTRGDFRRGMKSICAQPAYNGIKDVLTSVYKEGGMR ALYRGIGPTLIGILPYAGLKFYVYEELKRHVPEEHQSIVMRLSCGAIAGLFGQTITYPLDVVRRQMQVENLQPLSQGNARYRNTFEGLSTIVRNQGWKQL FAGLSINYIKIVPSVAIGFAAYDTMKVWLRIPPRQKSQSISPG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14560			Mitochondrial substrate carrie...		Potri.006G226300 [exp]	0	1
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Potri.006G032800 [exp]	2.64	0.8676
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.001G033200 [exp]	2.82	0.8630
AT3G12570		FYD	FYD (.1.2.3.4)		Potri.010G206400 [exp]	8.12	0.8240
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048132 [exp]	9.16	0.8599
AT1G80360			Pyridoxal phosphate (PLP)-depe...		Potri.001G177000 [exp]	12.24	0.8508
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.007G112700 [exp]	12.64	0.8517
AT3G13620			Amino acid permease family pro...		Potri.001G007300 [exp]	16.00	0.8178
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.019G020900 [exp]	17.54	0.8292
AT4G26180			Mitochondrial substrate carrie...		Potri.006G153600 [exp]	18.70	0.8151
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.015G086800 [exp]	19.79	0.8412

Compare expression of checked genes

Potri.006G226300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.