Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33050 434 / 5e-151 EDA39 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) AT2G26190 429 / 1e-148 calmodulin-binding family protein (.1) AT5G57010 385 / 1e-131 calmodulin-binding family protein (.1) AT3G58480 306 / 5e-100 calmodulin-binding family protein (.1) AT3G13600 300 / 4e-97 calmodulin-binding family protein (.1) AT3G52870 281 / 1e-91 IQ calmodulin-binding motif family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G226400 [exp] 636 / 0 AT4G33050 598 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.018G061901 [exp] 540 / 0 AT4G33050 601 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Potri.006G147900 [exp] 394 / 1e-134 AT2G26190 513 / 2e-178 calmodulin-binding family protein (.1) Potri.001G006200 [exp] 325 / 7e-107 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Potri.003G218800 [exp] 318 / 9e-104 AT3G13600 734 / 0.0 calmodulin-binding family protein (.1) Potri.006G197500 [exp] 313 / 1e-101 AT3G58480 588 / 0.0 calmodulin-binding family protein (.1) Potri.016G063000 [exp] 309 / 7e-101 AT3G58480 587 / 0.0 calmodulin-binding family protein (.1) Potri.006G114700 [exp] 303 / 5e-100 AT3G52870 561 / 0.0 IQ calmodulin-binding motif family protein (.1) Potri.001G005600 [exp] 294 / 7e-98 AT3G13600 431 / 4e-148 calmodulin-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013526 [exp] 429 / 1e-147 AT5G57010 581 / 0.0 calmodulin-binding family protein (.1) Lus10014872 [exp] 418 / 9e-144 AT4G33050 577 / 0.0 embryo sac development arrest 39, calmodulin-binding family protein (.1.2.3.4) Lus10025173 [exp] 377 / 8e-128 AT3G13600 575 / 0.0 calmodulin-binding family protein (.1) Lus10016052 [exp] 374 / 2e-126 AT3G13600 582 / 0.0 calmodulin-binding family protein (.1) Lus10039178 [exp] 318 / 6e-104 AT3G13600 697 / 0.0 calmodulin-binding family protein (.1) Lus10003257 [exp] 306 / 2e-101 AT3G52870 576 / 0.0 IQ calmodulin-binding motif family protein (.1) Lus10013759 [exp] 310 / 6e-101 AT3G58480 690 / 0.0 calmodulin-binding family protein (.1) Lus10029324 [exp] 301 / 2e-99 AT3G58480 472 / 6e-163 calmodulin-binding family protein (.1) Lus10016219 [exp] 304 / 8e-99 AT3G58480 569 / 0.0 calmodulin-binding family protein (.1) Lus10035595 [exp] 300 / 3e-98 AT3G52870 575 / 0.0 IQ calmodulin-binding motif family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G226500.2 pacid=42768878 polypeptide=Potri.006G226500.2.p locus=Potri.006G226500 ID=Potri.006G226500.2.v4.1 annot-version=v4.1 ATGTCAAAGTGGGCTAGGGCCAAGACAAGGGTTGCGAAGCTTGGGAAGGGTTTATCCAAGGATGAGAAGGCTCAAAAGCTAGCCCTACAACACTGGCTTG AAGCTATCGATCCACGCCATCGTTATGGACACAATTTACACTTCTATTATGATATTTGGTCTGACAGCATGAGCACACAACCTTTCTTCTACTGGTTGGA CATTGGTGATGGTAAAGAGGTAAACCTTGAGAAGTGCCCAAGGAGCAAGCTTCAACGCCAATGCATTCAATATCTTGGACCAAAAGAAAGGGAAGCATTT GAGGTGATTGTAGAGGGTGGCAAGCTTGTGTACCGCCAAGCCGGAATTCTTATTAACACGACGGAGGATACGAAGTGGATTTTCGTGTTAAGCACATCAA GATCCTTGTATGTAGGGCAGAAGAATAAAGGCGTTTTCCAGCACTCGAGTTTCCTAGCTGGAGCAGCTACAACAGCAGCTGGAAGATTAGTAGCCCAAGA TGGAGTTCTTCAGGCAATATGGCCCTATAGTGGTCATTATCTCCCTAACAAGGACAATTTCAAAGAGTTCATTAGTTTTCTCGAGGAGCATAACGTGGAC TTAACAAATGTTAAGAAATGTTCAATAGATGATGACCATGATTCATTCAAAGTTGTTGATGATAAGGAGATTGAGGAAGTCTTCACCACAATCACATCTA CCGACACAAAAGCTAATGATGTTGATGGGCCTATTGATAATACGACAGCCAATACTCAACAAGACAGTACAGATGCCAATGCAGCCAAGTTGCAAGCACC AGTATTTGACCTGAGCAAGCGTTTGTCGTGCAAGTGGACTAGTGGATATGGTCCCCGAATTGGATGTGTGAGGGACTATCCAGCTGAATTACAATCTCGG GCACTTGAGCAAGTCAACTTGTCGCCTAGGACCAATCCTGGTGCAGGGAGTTGTGTTCCAATCCCTTCACCGCGGCCTAGCCCAACGATTCGAGTCTCGC CAAGGCTCGCATACATGGGACTTCCTAGCCCGAGGGTATCCGTTAATTAG
AA sequence Show only first row Show all	>Potri.006G226500.2 pacid=42768878 polypeptide=Potri.006G226500.2.p locus=Potri.006G226500 ID=Potri.006G226500.2.v4.1 annot-version=v4.1 MSKWARAKTRVAKLGKGLSKDEKAQKLALQHWLEAIDPRHRYGHNLHFYYDIWSDSMSTQPFFYWLDIGDGKEVNLEKCPRSKLQRQCIQYLGPKEREAF EVIVEGGKLVYRQAGILINTTEDTKWIFVLSTSRSLYVGQKNKGVFQHSSFLAGAATTAAGRLVAQDGVLQAIWPYSGHYLPNKDNFKEFISFLEEHNVD LTNVKKCSIDDDHDSFKVVDDKEIEEVFTTITSTDTKANDVDGPIDNTTANTQQDSTDANAAKLQAPVFDLSKRLSCKWTSGYGPRIGCVRDYPAELQSR ALEQVNLSPRTNPGAGSCVPIPSPRPSPTIRVSPRLAYMGLPSPRVSVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33050		EDA39	embryo sac development arrest ...		Potri.006G226500 [exp]	0	1
AT4G33050		EDA39	embryo sac development arrest ...		Potri.006G226400 [exp]	1.00	0.9979
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.001G167700 [exp]	2.00	0.9638	LOX3.1
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Potri.002G130700 [exp]	4.47	0.9561	AOS.7
AT1G07710			Ankyrin repeat family protein ...		Potri.016G080700 [exp]	6.00	0.9457
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.003G182200 [exp]	6.24	0.9612	WRKY40.2
AT3G48080			alpha/beta-Hydrolases superfam...		Potri.012G074700 [exp]	6.24	0.9158	Pt-EDS1.3
AT1G72450	ZIM	TIFY11B, JAZ6	TIFY DOMAIN PROTEIN 11B, jasmo...		Potri.003G068900 [exp]	6.32	0.9568
AT4G21865			unknown protein		Potri.008G172000 [exp]	6.48	0.9524
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.005G068700 [exp]	7.93	0.9514
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Potri.011G131100 [exp]	9.16	0.9419

Compare expression of checked genes

Potri.006G226500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.