Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26180 386 / 9e-132 IQD6 IQ-domain 6 (.1) AT1G72670 201 / 7e-60 IQD8 IQ-domain 8 (.1) AT1G17480 135 / 2e-35 IQD7 IQ-domain 7 (.1) AT3G22190 123 / 9e-31 IQD5 IQ-domain 5 (.1.2) AT5G03040 87 / 2e-18 IQD2 IQ-domain 2 (.1.2.3) AT3G09710 87 / 2e-18 IQD1 IQ-domain 1 (.1.2) AT3G15050 82 / 3e-17 IQD10 IQ-domain 10 (.1) AT1G01110 76 / 2e-14 IQD18 IQ-domain 18 (.1.2) AT4G00820 75 / 2e-14 IQD17 IQ-domain 17 (.1) AT3G52290 73 / 7e-14 IQD3 IQ-domain 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G062001 [exp] 330 / 4e-112 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.003G042700 [exp] 294 / 3e-95 AT1G72670 223 / 3e-68 IQ-domain 8 (.1) Potri.001G215200 [exp] 158 / 1e-43 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.009G015800 [exp] 138 / 4e-36 AT3G22190 286 / 9e-93 IQ-domain 5 (.1.2) Potri.010G218100 [exp] 96 / 3e-21 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.006G131100 [exp] 96 / 3e-21 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 96 / 4e-21 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.001G375700 [exp] 92 / 1e-20 AT3G15050 245 / 1e-80 IQ-domain 10 (.1) Potri.011G096500 [exp] 90 / 1e-19 AT3G15050 262 / 2e-87 IQ-domain 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013522 [exp] 395 / 2e-134 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10014870 [exp] 233 / 4e-68 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10013362 [exp] 153 / 1e-41 AT3G22190 338 / 4e-113 IQ-domain 5 (.1.2) Lus10004107 [exp] 141 / 6e-37 AT3G22190 308 / 6e-101 IQ-domain 5 (.1.2) Lus10036508 [exp] 83 / 7e-17 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10019916 [exp] 81 / 3e-16 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 81 / 3e-16 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10026486 [exp] 81 / 6e-16 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3) Lus10015300 [exp] 77 / 2e-15 AT2G33990 242 / 3e-79 IQ-domain 9 (.1) Lus10025425 [exp] 76 / 7e-15 AT2G33990 243 / 1e-79 IQ-domain 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Potri.006G226600.2 pacid=42769355 polypeptide=Potri.006G226600.2.p locus=Potri.006G226600 ID=Potri.006G226600.2.v4.1 annot-version=v4.1 ATGGGTGCATCAGGAAAATGGGTGAAATCCATTATAGGTCTAAAAAAGTCTGATAAAGATCAAGACCAATATGAGAAGGTGAGTGGAAAGAGCAAGAAAT GGAAGCTATGGAGGAGTTCATCAGGAGATTTGGGGTCTTCATGGAAGGGTTTCAAAGGGAACCACAGAGCAGCATCAGAGGCATCGGGTTCTTCACCACT GGCTGATCCATTTACTGCTGCAATGGCTACTGTGGTTAGAGCTCCTCCTAAGGATTTCAGGGTTGTCAGGCAAGAATGGGCTGCTATCAGGATTCAAACT GCTTTTCGTGGATTCTTGGCAAGAAGGGCTCTGAGGGCCTTGAAAGGAGTGGTGAGACTCCAAGCTCTAGTTCGAGGTCGACAAGTGAGGAAGCAGGCTG CAGTGACACTTAAGTGCATGCAAGCTCTTGTTCGTGTTCAAGCTCATGTTAGGGCTCGTCGTGTGCGAATGTCCTTAGAAGGGCAGGCAGTGCAGAATAT GCTGAATGAGCGACGTAGCAAGGCTGACCTCTTGAAACATGCTGAGGAAGGGTGGTGTGATAGAAAGGGGACATTAGAAGACGTGAAGTCAAAACTGCAA ATGAGGCAAGAAGGAGCCTTCAAGAGAGAAAGAGCTATTGCTTACTCCCTTGCTCAAAAACAATGGAGATCAAACCCCAGCTCAAACACTCGACCCAATA ACTCGGTATATTCTTTCAAGAATGAGGAGTTTGATAAGAATAGCTGGGGATGGAGTTGGCTTGAACGTTGGATGGCAGCCAAGCCATGGGAGACTAGATT GATGGAACAAACCCATACTGATCCCTCAGTGACTCCACCACCCAAGTCCTGTGTAGATGCAAGCACACATTCGAAATCCTTTGAACAAAGTTCAGTGAAA GTGAGAAAGAACAATGTAACCACTAGAATTTCAGCGAGACCTCCAATCGGGCATGTTACTCGCTCATCTTCAAGTCCAAGTTCTGAAGTCCGCTTTGATG AGAGCTCAGCTTCTTCATCAATTTGTACTTCTACAACACCAATATCAGGAAACACTGGCTTGGCCTCAGATAAAACAGAGGAGAGTGGTAACAGCAGGCC AAACTACATGAACCTGACCGAGTCAACCAAGGCAAAGCAAAACACATCCAGTCATTTATTTCATAGGATTCAAAGGCAGTCCATGGATGAGTTTCAGTTT TTCAAAAAGTCAGCGGCGTTCTCAAATGGAGATTCAAAAAGCAGTGCTGGTTCTGATCCTTCAGTTAATTTATCCAAGCCACTTTGCTTGCCGACAAGAT TTGATAAGAACTCGATGAAACAAATAAGAGGAACGGATCATTTGTATGCCTAG
AA sequence Show only first row Show all	>Potri.006G226600.2 pacid=42769355 polypeptide=Potri.006G226600.2.p locus=Potri.006G226600 ID=Potri.006G226600.2.v4.1 annot-version=v4.1 MGASGKWVKSIIGLKKSDKDQDQYEKVSGKSKKWKLWRSSSGDLGSSWKGFKGNHRAASEASGSSPLADPFTAAMATVVRAPPKDFRVVRQEWAAIRIQT AFRGFLARRALRALKGVVRLQALVRGRQVRKQAAVTLKCMQALVRVQAHVRARRVRMSLEGQAVQNMLNERRSKADLLKHAEEGWCDRKGTLEDVKSKLQ MRQEGAFKRERAIAYSLAQKQWRSNPSSNTRPNNSVYSFKNEEFDKNSWGWSWLERWMAAKPWETRLMEQTHTDPSVTPPPKSCVDASTHSKSFEQSSVK VRKNNVTTRISARPPIGHVTRSSSSPSSEVRFDESSASSSICTSTTPISGNTGLASDKTEESGNSRPNYMNLTESTKAKQNTSSHLFHRIQRQSMDEFQF FKKSAAFSNGDSKSSAGSDPSVNLSKPLCLPTRFDKNSMKQIRGTDHLYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26180		IQD6	IQ-domain 6 (.1)		Potri.006G226600 [exp]	0	1
AT4G21820			binding;calmodulin binding (.1...		Potri.004G017500 [exp]	1.73	0.9542
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	5.09	0.9338
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.001G093700 [exp]	8.30	0.9290
AT2G36200			P-loop containing nucleoside t...		Potri.006G210700 [exp]	10.48	0.8996
AT4G14310			Transducin/WD40 repeat-like su...		Potri.008G169200 [exp]	10.48	0.9093
AT4G17240			unknown protein		Potri.016G008400 [exp]	10.48	0.9137
AT3G25100		CDC45	cell division cycle 45 (.1)		Potri.015G090600 [exp]	10.77	0.8720
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Potri.015G070300 [exp]	16.00	0.9029
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.007G138600 [exp]	18.00	0.8942
AT5G37010			unknown protein		Potri.012G145200 [exp]	18.00	0.9241

Compare expression of checked genes

Potri.006G226600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.