Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26850 159 / 7e-44 histone-lysine N-methyltransferases (.1.2) AT3G18640 90 / 2e-18 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT2G33835 74 / 2e-13 C3HZnF FES1 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G051900 [exp] 874 / 0 AT3G26850 168 / 4e-47 histone-lysine N-methyltransferases (.1.2) Potri.007G107800 [exp] 100 / 3e-21 AT3G18640 142 / 8e-35 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G061100 [exp] 95 / 9e-20 AT3G18640 140 / 2e-34 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.011G056600 [exp] 91 / 2e-18 AT2G33835 151 / 2e-38 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002082 [exp] 96 / 5e-20 AT3G26850 214 / 1e-59 histone-lysine N-methyltransferases (.1.2) Lus10003846 [exp] 92 / 8e-19 AT3G18640 192 / 4e-52 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10020889 [exp] 90 / 3e-18 AT3G18640 167 / 6e-43 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10015319 [exp] 90 / 4e-18 AT2G33835 128 / 7e-31 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10033487 [exp] 85 / 1e-16 AT3G18640 176 / 6e-46 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10025447 [exp] 76 / 7e-14 AT2G33835 140 / 1e-34 FRIGIDA-ESSENTIAL 1, Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G227200.8 pacid=42768258 polypeptide=Potri.006G227200.8.p locus=Potri.006G227200 ID=Potri.006G227200.8.v4.1 annot-version=v4.1 ATGTATGGTCAAGGCAGTTCCAATCCCCAGTCTGGCAGCCAAGGTCCTCAAACACCGATTGCCCCTCCATACTTACACCATCCACCTCCGCTCCCCCACA GTTTCCAACAAGGCCCTCTACCTCCGCCACCTCCTCACACTAGTCAGCCAAGTTTGCCTGGATATCAGCATGTTTCTATGCCCCAACATCTTGCAGTTCA GCAACTTGCACCTGGCAGGACGCCTAACCCGGGTCAGCCTTATTTGCACTCTTCTGCAACAGTTCATGGAAGTGCTCCCATGCCACATGTTTATGCACCT GCGCAGCAAAATTCACAGCATTCTTCCTATTTAGCATCGGTGCCTCCCCCTCCCCCTCCCTTTGGTTCACACCGTCCTGAAATGTTACAGGCCTCGCTGC CTTATAGAGGTTTGCCTCCTCCACCACCTTCACAAGGTCAGGGGTTTTATAAATCTCCAGTTCATTCGTTGCCAAAACAACTAGCTGGTGTGCAGGGTCA TGTCCCCCCTCCACCTCCCCCACCTCTTCCTCCAACTTCCAGTTTCCTGACTCCTGCTCTCTCTGGGAGTTCTGCTGAGCCTCACGTTGGAAATCCTCAA ATGCTTTCCACAGCTCCTCCCCCACCACCACCACCACTGCCCCCACCACCGACCTCTTGTGCACCACCCATTCCACCTCTGCATAACTCCCACATGATGC CATTATCTGCACCCGTGCTAGATGGTTCCATTCCACAATTTTACTCTGATTTTGCTTCCAATTCCTCCAAACCTTCTGGTGATAAATTGGGCCCTACTAG TTCCGCCAATGAAGTCATTCCTCTCAATCAAGGTGGACATAATGTTCTCATGCGTGATGACAACTTATATCTGGAAGGTGGAAGTGGTGCTGGGGTGTGT TTTAAATTGGATGAAGGAAAGACTTTTTCCGAACCCAGTCATTTGATGGATGCAGTTGGATCCCACATGTCTTCTGACTCTGATATGGAGATGGAAGATG ACATTACACAGTCTGACAATGACCAGGCAGTAAATTACCCTATTGGAGGTCAAACTCATGGTAATCATTTGATAGCTGGAGCATTTGATGTAAGAGAGCA GTTGCATGAACTGCAGAGTTCAGCACAATCTGACGCTTCCACAATGGTTTTATCTCTCTCTGGCTCCTCAAGGCTGAATAATGGTGAACAAGGCTCAAAA CTCATCAATTGTTATAACCAATTGACATCTGGGGAGTCAGTTTCTGAAGTTCATAGCCCAGTCATTAATTCAGCAGGAGCTGATGAAAAAAGTTCATTAA GGATCATGGCAGCTGCTGGATGCATCAATTCTGATAAATATTCTGGTGAAGTTTTTAGAGGCAGCAGCCCATTCAAACTTGTTCAAGATTATGCTTCTGA GGATTGCTCAGAAAATAATGAGGAGCCCTGTTTGAAAGATGACATTCCTAAAACTGCCTCAGACTTGGTTACTGTTGGCTCTGAATATCTGCAGCAGCAG CAACCACCCTATGGTTTGGATCCCTCTGCTATTGATAACGTGTATGGTCTATCTGGGAAGGTGGGTTCTTCATCTAGACTCCCACCAGATATTCTGGACT CAAATCAGCCATCTCACCTGCCAGATTTTGGAGCAAAAAATTCAGCTCACCTGAATTCTTTTCCAACTAGTTTTGAGCAGCCACTCAACTCCGGATTCAG TTCTGATGTTGTAAGGCAAGAAAAGGTTCCATCCTGTTCTTGCAAGGATGATCATTCTTCATGTTTGAACCATGCTTCACTTGATGGACAAGGTGTCAGT GTTGGAACAAGACATCCAATACCTTCGCCCAATTCTGCCAGGGGGGTTGCACAAATTATTCCTAGCTCAGGAGGTGATCAGTATGATCCGTTTTTAGACA GCATTGAGCCAACTTCAAACTCATTTAAGAGACTTGATCACATTCAGAAGTGGGAACCCATTGACACTGATGTTATGCCGAGGCTTAGTGCCTCAAACAA ATCATTGGATGTTGAAGAAAACAAGAAAGAAGTTAGAGGCATTGTGGTTTCCACATCTCTTGATAATGAGGAGTTTGGTGAGATTGCAGATGCAGAAGTG GGTGATGTTGAGAATCAGAGCCAGAGTACTCCTGTTGTAGTGAATGTGAATATGGGTGATATGGAGATTGATCAGATTAAGTCTCCAAAGAAGAGCAAAA AGAGCAAGGAGTCCAGATCAATGAAGCTCTTTAAGGTTACCCTTGCAGATTTTGTCAAGGAGGTTTTAAAGCCATCATGGCAACAGGGTAACATGAGTAA GGAAGCATTTAAGACTATTGTCAAGAAGACGGTTGATAAGGTTGCAGGAGCAATGAAGAGCCATCAAATACCCAAGTCCAAGGCAAAAATGGATCATTAC ATTGACTCATCGCAACAGAAATTAACAAAACTTGTGATGGGTTATGTTGATAAGTATGCCAAAGGGTAA
AA sequence Show only first row Show all	>Potri.006G227200.8 pacid=42768258 polypeptide=Potri.006G227200.8.p locus=Potri.006G227200 ID=Potri.006G227200.8.v4.1 annot-version=v4.1 MYGQGSSNPQSGSQGPQTPIAPPYLHHPPPLPHSFQQGPLPPPPPHTSQPSLPGYQHVSMPQHLAVQQLAPGRTPNPGQPYLHSSATVHGSAPMPHVYAP AQQNSQHSSYLASVPPPPPPFGSHRPEMLQASLPYRGLPPPPPSQGQGFYKSPVHSLPKQLAGVQGHVPPPPPPPLPPTSSFLTPALSGSSAEPHVGNPQ MLSTAPPPPPPPLPPPPTSCAPPIPPLHNSHMMPLSAPVLDGSIPQFYSDFASNSSKPSGDKLGPTSSANEVIPLNQGGHNVLMRDDNLYLEGGSGAGVC FKLDEGKTFSEPSHLMDAVGSHMSSDSDMEMEDDITQSDNDQAVNYPIGGQTHGNHLIAGAFDVREQLHELQSSAQSDASTMVLSLSGSSRLNNGEQGSK LINCYNQLTSGESVSEVHSPVINSAGADEKSSLRIMAAAGCINSDKYSGEVFRGSSPFKLVQDYASEDCSENNEEPCLKDDIPKTASDLVTVGSEYLQQQ QPPYGLDPSAIDNVYGLSGKVGSSSRLPPDILDSNQPSHLPDFGAKNSAHLNSFPTSFEQPLNSGFSSDVVRQEKVPSCSCKDDHSSCLNHASLDGQGVS VGTRHPIPSPNSARGVAQIIPSSGGDQYDPFLDSIEPTSNSFKRLDHIQKWEPIDTDVMPRLSASNKSLDVEENKKEVRGIVVSTSLDNEEFGEIADAEV GDVENQSQSTPVVVNVNMGDMEIDQIKSPKKSKKSKESRSMKLFKVTLADFVKEVLKPSWQQGNMSKEAFKTIVKKTVDKVAGAMKSHQIPKSKAKMDHY IDSSQQKLTKLVMGYVDKYAKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26850			histone-lysine N-methyltransfe...		Potri.006G227200 [exp]	0	1
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.008G003600 [exp]	1.41	0.9379
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.004G020300 [exp]	1.41	0.9257
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	4.58	0.9170
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.006G165100 [exp]	4.89	0.9116	Pt-PPD1.4
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Potri.001G262600 [exp]	6.48	0.9000
AT3G17740			unknown protein		Potri.015G033300 [exp]	7.34	0.9000
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	7.48	0.8998
AT5G55600			agenet domain-containing prote...		Potri.001G365800 [exp]	7.74	0.8907
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Potri.011G024800 [exp]	8.06	0.9067
AT5G46190			RNA-binding KH domain-containi...		Potri.011G082500 [exp]	8.36	0.8915

Compare expression of checked genes

Potri.006G227200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.