Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18600 324 / 2e-110 ATRBL12 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, RHOMBOID-like protein 12 (.1) AT1G74130 204 / 1e-63 Rhomboid-related intramembrane serine protease family protein (.1.2) AT1G74140 181 / 8e-55 Rhomboid-related intramembrane serine protease family protein (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059501 [exp] 94 / 2e-23 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018399 [exp] 260 / 3e-85 AT1G18600 260 / 2e-85 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, RHOMBOID-like protein 12 (.1) Lus10007614 [exp] 226 / 4e-73 AT1G18600 216 / 5e-69 ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12, RHOMBOID-like protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0207 [poplar] [flax] Rhomboid-like PF01694 [poplar] [flax] Rhomboid Rhomboid family
Representative CDS sequence Show only first row Show all	>Potri.006G227300.1 pacid=42770447 polypeptide=Potri.006G227300.1.p locus=Potri.006G227300 ID=Potri.006G227300.1.v4.1 annot-version=v4.1 ATGCAGAGACTCCTTTCTCTTAGAAATGCCTCATCAAACCTCCCCAAAAAACTCACAAGCAATTCTTCACTTCTCCTCTCTCACCCTTATAAAACCTTTA CAAAACCAATCCACCAGTACCAAAACCATATTTTAAGCTCCTCTCTGACAATCCATTCATGTCAATCATATTCATACCACCATCTTCCAGCTAAAATTCT CCATGGCTTTCTCTCAAAACATTTTTTGTCCATTTTATCGAACACCCATTTCAGGGTTTCAACCAAAAATCTCACAGATTGCAAAGTTGGCTTCTTTATA GCTCGGTTTGCTAGAGGGTATTCTTGGTCCAACCTAAGTCTTGGTTCTAATCGCCGTGGCTGGAGATCATGGTTCAATCGACTATCTGCTGATAATGTGG TTCTGGGATTGATCATAGCCAATGCAGCCGTTTTTATGTTATGGAGGATTGAAGATCAAAAGTTTATGATGGAAAATTTTATGATTTCATTGGACAATTT CAGAAGTGGGCGTATTCACACCCTTGTTACTTCAGCATTCAGTCATATTGATATTGGGCACATTGCGTTTAACATGATTGGACTTTACTTCTTCGGGACA AATATTGCAAGGACTTTTGGACCTGAATTCTTGTTGAAGTTGTATCTAGCTGGAGCAATTGGTGGCTCAGTGTTCTACTTGCTGCACCATGGCTACATGG ATTTATCATCGAAGGGACAGGGAATGTGGGCGAGGGATTCTTCAAGGACTCCAGGATTGGGGGCTAGTGGGGCCGTCAATGCTATCATGTTGCTCGATAT ATTCTTGAATCCAAGAGCTACTCTATACTTCGATTTTATCATACCAGTTCCAGCAATCTTACTGGGTATCTTTTTAATTGGGAAAGATGTGTTGAGGGTA ATGGAGGGAAACAGTAACATCTCAGGATCAGCTCACTTGGGAGGTGCTGCAGTTGCAGCTATAGCTTGGGCTAGAATTAAGCGAGGACGCTTCTGA
AA sequence Show only first row Show all	>Potri.006G227300.1 pacid=42770447 polypeptide=Potri.006G227300.1.p locus=Potri.006G227300 ID=Potri.006G227300.1.v4.1 annot-version=v4.1 MQRLLSLRNASSNLPKKLTSNSSLLLSHPYKTFTKPIHQYQNHILSSSLTIHSCQSYSYHHLPAKILHGFLSKHFLSILSNTHFRVSTKNLTDCKVGFFI ARFARGYSWSNLSLGSNRRGWRSWFNRLSADNVVLGLIIANAAVFMLWRIEDQKFMMENFMISLDNFRSGRIHTLVTSAFSHIDIGHIAFNMIGLYFFGT NIARTFGPEFLLKLYLAGAIGGSVFYLLHHGYMDLSSKGQGMWARDSSRTPGLGASGAVNAIMLLDIFLNPRATLYFDFIIPVPAILLGIFLIGKDVLRV MEGNSNISGSAHLGGAAVAAIAWARIKRGRF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Potri.006G227300 [exp]	0	1
AT5G07900			Mitochondrial transcription te...		Potri.008G216200 [exp]	4.24	0.7083
AT1G50910			unknown protein		Potri.011G136400 [exp]	9.84	0.8151
AT2G34040			Apoptosis inhibitory protein 5...		Potri.011G062500 [exp]	12.64	0.7252
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Potri.012G003700 [exp]	18.65	0.7495	CDC2.6
AT2G39120		WTF9	what's this factor 9, Ubiquiti...		Potri.008G036600 [exp]	20.49	0.7157
AT1G34160			Tetratricopeptide repeat (TPR)...		Potri.005G199800 [exp]	22.67	0.7875
AT1G09280			unknown protein		Potri.005G011300 [exp]	24.33	0.6634
AT1G07740			Tetratricopeptide repeat (TPR)...		Potri.001G020501 [exp]	28.56	0.7560
AT3G21465			unknown protein		Potri.008G205300 [exp]	42.47	0.7210
AT1G18485			Pentatricopeptide repeat (PPR)...		Potri.009G067000 [exp]	48.33	0.7446

Compare expression of checked genes

Potri.006G227300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.