Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13790 660 / 0 ATCWINV1, ATBFRUCT1 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) AT1G55120 655 / 0 ATFRUCT5, ATCWINV3 6-fructan exohydrolase, beta-fructofuranosidase 5 (.1.2.3) AT5G11920 646 / 0 ATCWINV6 6-&1-fructan exohydrolase (.1.2) AT3G52600 576 / 0 ATCWINV2 cell wall invertase 2 (.1.2) AT3G13784 566 / 0 ATCWINV5 cell wall invertase 5 (.1) AT2G36190 562 / 0 ATCWINV4 cell wall invertase 4 (.1) AT1G12240 483 / 2e-164 ATBETAFRUCT4, VAC-INV VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) AT1G62660 481 / 1e-163 Glycosyl hydrolases family 32 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G227400 [exp] 764 / 0 AT3G13790 703 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Potri.016G077500 [exp] 590 / 0 AT3G52600 751 / 0.0 cell wall invertase 2 (.1.2) Potri.016G077400 [exp] 583 / 0 AT3G52600 755 / 0.0 cell wall invertase 2 (.1.2) Potri.006G210600 [exp] 579 / 0 AT3G52600 770 / 0.0 cell wall invertase 2 (.1.2) Potri.003G112600 [exp] 512 / 1e-175 AT1G12240 882 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.003G126300 [exp] 489 / 5e-167 AT1G12240 819 / 0.0 VACUOLAR INVERTASE, Glycosyl hydrolases family 32 protein (.1) Potri.015G127100 [exp] 476 / 4e-162 AT1G62660 712 / 0.0 Glycosyl hydrolases family 32 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001529 [exp] 739 / 0 AT3G13790 598 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10008392 [exp] 624 / 0 AT3G13790 756 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037633 [exp] 594 / 0 AT3G13790 704 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10037631 [exp] 570 / 0 AT3G13790 633 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015613 [exp] 570 / 0 AT3G13790 641 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10015614 [exp] 558 / 0 AT3G13790 658 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10014219 [exp] 556 / 0 AT2G36190 711 / 0.0 cell wall invertase 4 (.1) Lus10037632 [exp] 552 / 0 AT3G13790 648 / 0.0 ARABIDOPSIS THALIANA CELL WALL INVERTASE 1, Glycosyl hydrolases family 32 protein (.1.2) Lus10014217 [exp] 542 / 0 AT2G36190 688 / 0.0 cell wall invertase 4 (.1) Lus10017015 [exp] 528 / 0 AT2G36190 683 / 0.0 cell wall invertase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0143 [poplar] [flax] B_Fructosidase PF00251 [poplar] [flax] Glyco_hydro_32N Glycosyl hydrolases family 32 N-terminal domain CL0004 [poplar] [flax] Concanavalin PF08244 [poplar] [flax] Glyco_hydro_32C Glycosyl hydrolases family 32 C terminal
Representative CDS sequence Show only first row Show all	>Potri.006G227500.1 pacid=42767320 polypeptide=Potri.006G227500.1.p locus=Potri.006G227500 ID=Potri.006G227500.1.v4.1 annot-version=v4.1 ATGGAGATTCTTGCTGTTTTCTTGGTTGGTTTATGCTGTGTTTTGCAAAGCAGTGGAATTGAAGTTGAAGCCTTGGAGAATAATGGATGCCAGAATTTTC AGCCTCACACGGTTATGATGCAAGAAAAGCAGTCATATAGAACCTCCTTTCACTTCCAACCACCAAGAAATTGGCTTAATGACCCTAATGGGCCAATGTG GTATAAGGGGGTTTATCATTTATTTTACCAATACAATCCATATGGAGCATTGTTTGGTGATTTTATGATATGGGCGCATTCTGTATCATATGATCTCATC AACTGGATTCATCTCAATCATGCCCTTTGCCCAACGGAACCATATGACATCAACAGTTGCTGGTCTGGTTCTGCTACAATTCTTCCTGGGAAAGGACCTG TCATTTTATACACTGGAATTGATGCTAACCATTGTCAGGTTCAGAATATGGCAATGCCAAAGAATCTGTCTGATCCATTTCTTGAAGAATGGATAAAATT TGCTCAAAATCCTATCATGACACCTCCTGATGGTGTTGAAGGGAACAATTTTAGAGATCCTACAACAGCTTGGTTGAGTCATGATGGAAAATGGAGTGTG ATCATTGGAAGCTGGAACAATAATCAAGGAATGGCAATTCTGTATCGAAGTGAAGATTTTTTTAACTGGACTAAGTACCAAGATCCTCTTTATTCAACTG AAAGAACTGGGATGTGGGAGTGCCCGGACTTTTATCCTGTGTCTGTTAATAGCACGGATGGAGTAGATACTTCTGTCCTGAATGCGGGTGTTAAACATGT GATGAAGGCAAGCTTCAATTCTCATGACTATTACATGATTGGTACTTATGTCCCAGAGATAGAAAAATACATTCCTGATAATGACTTTACCGGTACCGGT ATGGACTTGAGGTATGACCATGGAAAATTTTATGCTTCAAAGACATTCTTTGACAGTGTCAAGAATAGGAGAATCTTATGGGGTTGGGTAAATGAGTCTG ATAGCATAGAAGATGACATGGACAAAGGATGGTCTGGACTTCAGTCTATTCCTAGGCACATTTGGTTGGATAGGAGTGGAAAGCAATTAGTGCAGTGGCC CATTGAGGAAATCAACAAACTACATGGCAAGAAAGTCAGTTTCCTTGATAAGAAAATTGATAGTGAGTCAATATTTGAAGTTGAAGGCATTACTGCTGCA CAGGCAGATGTGGAGGTTGTTTTTGAGTTGCCAGAACTGCAAGAGACTGAGTTCTTGAACCTTACTGCAGTTGATCCTCAGCTACTTTGTTCTGACGCAA ATGCATCAATCAAAGGCAGATTGGGTCCATTTGGTTTATTAACTTTAGCAACGAAGGACTTAACTGAACAAACTGCGATTTTCTTTCGGATATTTAAAGG CCTGAAAGGATATGTAGTACTCATGTGCAGTGATCAAAGCAGATCTGCTCTTCGAGATGAGGTCGATAAAACCACATATGGAGCTTTCATAGATATCGAC CCTCAGCGTGAAAATATTTCATTAAGAAGCTTGATTGATCACTCCATTATTGAGAGTTTTGGTGGGGAAGGGAGAGCTTGCATCACCAATAGAGTTTATC CTAAGTTGGCTATTCAAGAAGAAGCTCGCCTGTTTATATTTAACAATGGAACCCTGAGCGTGACGATCTCTAGTCTGAATGCTTGGAGCATGAACAAAGC CCAAATCAATCACAAAGAAAACTTCATTTAA
AA sequence Show only first row Show all	>Potri.006G227500.1 pacid=42767320 polypeptide=Potri.006G227500.1.p locus=Potri.006G227500 ID=Potri.006G227500.1.v4.1 annot-version=v4.1 MEILAVFLVGLCCVLQSSGIEVEALENNGCQNFQPHTVMMQEKQSYRTSFHFQPPRNWLNDPNGPMWYKGVYHLFYQYNPYGALFGDFMIWAHSVSYDLI NWIHLNHALCPTEPYDINSCWSGSATILPGKGPVILYTGIDANHCQVQNMAMPKNLSDPFLEEWIKFAQNPIMTPPDGVEGNNFRDPTTAWLSHDGKWSV IIGSWNNNQGMAILYRSEDFFNWTKYQDPLYSTERTGMWECPDFYPVSVNSTDGVDTSVLNAGVKHVMKASFNSHDYYMIGTYVPEIEKYIPDNDFTGTG MDLRYDHGKFYASKTFFDSVKNRRILWGWVNESDSIEDDMDKGWSGLQSIPRHIWLDRSGKQLVQWPIEEINKLHGKKVSFLDKKIDSESIFEVEGITAA QADVEVVFELPELQETEFLNLTAVDPQLLCSDANASIKGRLGPFGLLTLATKDLTEQTAIFFRIFKGLKGYVVLMCSDQSRSALRDEVDKTTYGAFIDID PQRENISLRSLIDHSIIESFGGEGRACITNRVYPKLAIQEEARLFIFNNGTLSVTISSLNAWSMNKAQINHKENFI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227500 [exp]	0	1
AT1G60670			Protein of unknown function (D...		Potri.008G145100 [exp]	3.46	0.7931
AT1G06210			ENTH/VHS/GAT family protein (....		Potri.002G038000 [exp]	12.32	0.7220
AT4G15080			DHHC-type zinc finger family p...		Potri.016G018400 [exp]	16.37	0.7648
AT5G51140			Pseudouridine synthase family ...		Potri.015G101300 [exp]	16.73	0.7543
AT5G17850			Sodium/calcium exchanger famil...		Potri.013G065900 [exp]	17.00	0.7399
AT1G69340			appr-1-p processing enzyme fam...		Potri.010G161500 [exp]	23.23	0.6833
AT1G48960			Adenine nucleotide alpha hydro...		Potri.012G059100 [exp]	23.87	0.7534
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.004G069200 [exp]	27.92	0.7215
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.001G185900 [exp]	28.63	0.7589
AT5G23170			Protein kinase superfamily pro...		Potri.004G221800 [exp]	28.77	0.7498

Compare expression of checked genes

Potri.006G227500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.