Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45260 308 / 1e-99 C2H2ZnF C2H2-like zinc finger protein (.1) AT1G55110 308 / 2e-99 C2H2ZnF ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7, ATIDD7, ARABIDOPSISTHALIANAINDETERMINATE(ID)-DOMAIN7 indeterminate(ID)-domain 7 (.1) AT3G50700 307 / 5e-99 C2H2ZnF ATIDD2 indeterminate(ID)-domain 2 (.1) AT5G66730 304 / 3e-97 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) AT1G03840 302 / 1e-96 C2H2ZnF MGP Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) AT5G44160 299 / 6e-96 C2H2ZnF AtIDD8, NUC nutcracker, INDETERMINATE DOMAIN 8, C2H2-like zinc finger protein (.1) AT2G02080 301 / 7e-96 C2H2ZnF ATIDD4 indeterminate(ID)-domain 4 (.1), indeterminate(ID)-domain 4 (.2) AT1G14580 296 / 9e-95 C2H2ZnF C2H2-like zinc finger protein (.1.2) AT2G02070 300 / 1e-94 C2H2ZnF ATIDD5 indeterminate(ID)-domain 5 (.1) AT3G13810 296 / 4e-94 C2H2ZnF ATIDD11 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G052200 [exp] 781 / 0 AT1G55110 339 / 1e-111 indeterminate(ID)-domain 7 (.1) Potri.003G036900 [exp] 412 / 8e-139 AT1G55110 372 / 3e-124 indeterminate(ID)-domain 7 (.1) Potri.006G129300 [exp] 315 / 3e-101 AT5G03150 371 / 1e-123 JACKDAW, C2H2-like zinc finger protein (.1) Potri.002G048000 [exp] 309 / 1e-99 AT4G02670 362 / 6e-122 indeterminate(ID)-domain 12 (.1) Potri.017G017100 [exp] 308 / 2e-99 AT1G03840 459 / 1e-158 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Potri.008G142500 [exp] 310 / 4e-99 AT2G02070 407 / 6e-136 indeterminate(ID)-domain 5 (.1) Potri.016G088500 [exp] 308 / 6e-99 AT5G03150 353 / 1e-116 JACKDAW, C2H2-like zinc finger protein (.1) Potri.013G019200 [exp] 308 / 7e-99 AT3G50700 327 / 4e-107 indeterminate(ID)-domain 2 (.1) Potri.002G208444 [exp] 308 / 3e-98 AT3G50700 311 / 2e-100 indeterminate(ID)-domain 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008396 [exp] 320 / 9e-103 AT3G13810 339 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10004840 [exp] 307 / 5e-98 AT3G13810 337 / 1e-110 indeterminate(ID)-domain 11 (.1), indeterminate(ID)-domain 11 (.2), indeterminate(ID)-domain 11 (.3) Lus10010820 [exp] 294 / 2e-96 AT3G50700 349 / 2e-119 indeterminate(ID)-domain 2 (.1) Lus10041723 [exp] 300 / 2e-95 AT3G50700 489 / 1e-170 indeterminate(ID)-domain 2 (.1) Lus10007168 [exp] 298 / 7e-95 AT5G66730 386 / 2e-129 INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1) Lus10026497 [exp] 295 / 6e-94 AT5G03150 384 / 2e-129 JACKDAW, C2H2-like zinc finger protein (.1) Lus10019927 [exp] 295 / 7e-94 AT5G03150 386 / 6e-130 JACKDAW, C2H2-like zinc finger protein (.1) Lus10018633 [exp] 287 / 2e-91 AT1G03840 365 / 2e-122 Magpie, C2H2 and C2HC zinc fingers superfamily protein (.1.2) Lus10004497 [exp] 286 / 7e-91 AT1G55110 341 / 5e-113 indeterminate(ID)-domain 7 (.1) Lus10007409 [exp] 287 / 9e-91 AT3G45260 308 / 4e-100 C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G227600.1 pacid=42769444 polypeptide=Potri.006G227600.1.p locus=Potri.006G227600 ID=Potri.006G227600.1.v4.1 annot-version=v4.1 ATGATGAAAGGCTTGGTAATGGATGAGAATATGTCCAATTTAACTTCAGCATCCGGTGAAGTAAGTGCTTCTTCAGGCAGCAGAATTGAAACCGGTGCTA AACACCCACAACACTCCTTTGATTCGACTAATCAACCACCACCAAAGAAGAAGAAAAATCTTCCAGGAAACCCAGACCCAGATGCAGAAGTGATAGCTTT GTCTCCCAACAGTCTACAAACGACAAACAGATTTCTATGTGAGATCTGCAACAAAGGATTCAAAAGAGATCAGAATCTTCAACTTCATAGAAGAGGGCAT AACCTGCCATGGAAACTAAAGCAAAGAACAAACAAGGAGGTGAGAAAGAAGGTGTATGTGTGTCCAGAGGTTACATGCGTGCACCATGACCCATCAAGGG CTCTTGGGGACCTTACAGGGATCAAGAAGCACTTTAGCAGAAAGCATGGTGAGAAGAAGTGGAAGTGTGAAAAGTGCTCAAAACGTTATGCAGTTCAATC AGACTGGAAAGCTCACTCTAAAATTTGTGGCACAAGAGAGTATAGATGTGATTGCGGTACTCTTTTTTCTAGGAGGGACAGTTTCATCACTCACAGAGCC TTCTGTGATACTTTAGCAGAAGAGAGTGCAAGATCTATGACGGTTCTCTCCTCTCAACAGCCTGGCTCCTCAGCTTCACACCTGATGAACTTACAAGCCT TATCAGTCAAAAGAGAGCAAGATCAAAACCAGTATCTTTTTAATCCAAGACCAGATAGCATCCCACCATGGTTAGCTTGTCCACCAATAGGAGAAGCTGG TCCAGGTCCACCACAAATCAATCTCTCCTCGCAGTTATTCCCAGCACATTTAGACCAGTCATTTTTGCAACATGGAAACCCTAGCCCTAACCCTACTGTA CTTCCTCCATTCCAGCCCTCATCAACAGCTTCCCCTCACATGTCTGCCACTGCGTTGCTGCAAAAAGCAGCACAAATGGGGGTGACTGTGAGCAAGCCTT CCCCGTCACCTGCTACTGCTGCCATACTTAGACCCCACCAAGGTCACATGTCTGATCATCAAAACCCTGGTTTCGGTTCCACATTGCCAGCTACGTCCAC AGCAAATCCTGGTCTATTTTTTACATCACGTGAAGAGATGGGAAGTGGGTTTGGTCATGGTCTGGCATCTCTAGAGGATAAAGCTGGTACTGTCACCTCT GGTATCATGGAATATCTTGCTGCAAGTGATGGAGGAGGGACTTCTCTAGTCCATGATATGATGAGTTCTTTGTCTTCTGCGAGTGGATTTGATGGTTCAT CTTTTGACAACGAGGATTTCAATGGAATGTTGAATCCAAAAAGAGACAGTAGTAATTTTCAGGAAATTCTCTCCAAGTCAACAGAGTCCCGATTTATAAG GAGTGATGCTGCATCTGGTAGTCATCATGGAGGCGGCAATGACGGCTTGACAAGAGATTTCTTGGGTCTTAAAGCCTTTCCCCACAAAGACTTTCTAAAT CTACCAGCTGGGTTTGATCACATTAGCCCTTCAACATACGGGCAAAGGAACCAAAATCTGCCACCACCTTGGCAAGGAAGCTCCATGGACTTTCAGCTAT ACAATAAAAAGTAG
AA sequence Show only first row Show all	>Potri.006G227600.1 pacid=42769444 polypeptide=Potri.006G227600.1.p locus=Potri.006G227600 ID=Potri.006G227600.1.v4.1 annot-version=v4.1 MMKGLVMDENMSNLTSASGEVSASSGSRIETGAKHPQHSFDSTNQPPPKKKKNLPGNPDPDAEVIALSPNSLQTTNRFLCEICNKGFKRDQNLQLHRRGH NLPWKLKQRTNKEVRKKVYVCPEVTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRA FCDTLAEESARSMTVLSSQQPGSSASHLMNLQALSVKREQDQNQYLFNPRPDSIPPWLACPPIGEAGPGPPQINLSSQLFPAHLDQSFLQHGNPSPNPTV LPPFQPSSTASPHMSATALLQKAAQMGVTVSKPSPSPATAAILRPHQGHMSDHQNPGFGSTLPATSTANPGLFFTSREEMGSGFGHGLASLEDKAGTVTS GIMEYLAASDGGGTSLVHDMMSSLSSASGFDGSSFDNEDFNGMLNPKRDSSNFQEILSKSTESRFIRSDAASGSHHGGGNDGLTRDFLGLKAFPHKDFLN LPAGFDHISPSTYGQRNQNLPPPWQGSSMDFQLYNKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G45260	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.006G227600 [exp]	0	1
AT3G49055			unknown protein		Potri.015G146100 [exp]	2.44	0.9191
AT2G36630			Sulfite exporter TauE/SafE fam...		Potri.006G117900 [exp]	3.87	0.9141
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144200 [exp]	5.19	0.8922
AT1G29220			transcriptional regulator fami...		Potri.004G058700 [exp]	8.83	0.8939
					Potri.007G085800 [exp]	9.05	0.8615
AT5G45800		MEE62	maternal effect embryo arrest ...		Potri.004G058500 [exp]	9.16	0.9011
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G069600 [exp]	9.74	0.9005
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Potri.010G232200 [exp]	13.96	0.8863
AT3G61260			Remorin family protein (.1)		Potri.014G081300 [exp]	14.24	0.8701
AT1G09520			unknown protein		Potri.010G002200 [exp]	16.91	0.8715

Compare expression of checked genes

Potri.006G227600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.