Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-FTSH4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26140 1066 / 0 FTSH4 FTSH protease 4 (.1) AT5G53170 536 / 0 FTSH11 FTSH protease 11 (.1) AT5G15250 384 / 1e-123 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT5G42270 373 / 4e-119 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT1G50250 372 / 1e-118 FTSH1 FTSH protease 1 (.1) AT1G06430 362 / 2e-115 FTSH8 FTSH protease 8 (.1) AT2G30950 361 / 1e-114 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1) AT2G29080 311 / 1e-94 FTSH3 FTSH protease 3 (.1) AT1G07510 311 / 2e-94 FTSH10 FTSH protease 10 (.1) AT3G47060 293 / 6e-88 FTSH7 FTSH protease 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G020700 [exp] 543 / 0 AT5G53170 1096 / 0.0 FTSH protease 11 (.1) Potri.012G000700 [exp] 520 / 4e-175 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.005G249200 [exp] 378 / 5e-121 AT5G42270 1077 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.017G084000 [exp] 372 / 5e-119 AT5G15250 959 / 0.0 FTSH protease 6 (.1.2) Potri.002G012000 [exp] 372 / 6e-119 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Potri.002G215100 [exp] 363 / 1e-115 AT2G30950 1040 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.014G139500 [exp] 359 / 7e-114 AT2G30950 1057 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Potri.009G033600 [exp] 316 / 2e-96 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 315 / 3e-96 AT2G29080 1123 / 0.0 FTSH protease 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013521 [exp] 550 / 0 AT2G26140 558 / 0.0 FTSH protease 4 (.1) Lus10038819 [exp] 525 / 2e-177 AT5G53170 1064 / 0.0 FTSH protease 11 (.1) Lus10014930 [exp] 525 / 3e-177 AT5G53170 1077 / 0.0 FTSH protease 11 (.1) Lus10039334 [exp] 520 / 1e-174 AT5G53170 1087 / 0.0 FTSH protease 11 (.1) Lus10001060 [exp] 513 / 6e-172 AT5G53170 1090 / 0.0 FTSH protease 11 (.1) Lus10012277 [exp] 372 / 1e-121 AT1G50250 935 / 0.0 FTSH protease 1 (.1) Lus10021824 [exp] 372 / 1e-118 AT5G42270 934 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001054 [exp] 368 / 1e-117 AT2G30950 1154 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1) Lus10016003 [exp] 367 / 1e-116 AT5G42270 1129 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1) Lus10001420 [exp] 368 / 3e-116 AT2G30950 1155 / 0.0 VARIEGATED 2, FtsH extracellular protease family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [poplar] [flax] Peptidase_MA PF01434 [poplar] [flax] Peptidase_M41 Peptidase family M41 CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily)
Representative CDS sequence Show only first row Show all	>Potri.006G227700.3 pacid=42770561 polypeptide=Potri.006G227700.3.p locus=Potri.006G227700 ID=Potri.006G227700.3.v4.1 annot-version=v4.1 ATGGCTTGGAGGCGCCTAATCACTCAGGTTTCGAGGCATCAATCAGAGTTGGGACAATTCAAAAACTTGTTTGTCAGAACTTATTTTCCCATAAACAAGT TTGGAGGCAGTGTAGGGAATAGGATTTTAAATGCTGAGAGGAGGTTCCAATCAAGTTATGTTGGTAATTTAGCTCGTAGGATGCGTGATATGGATGATGG TAGTGAAGTTCTACAACTTAAAGAACTTCTACGACATGATCCTGAAGCAGTGATAAGACTTTTTGAAAGTCAACCATCTTTATATGGCAATCCTTCAGCA CTTTCTGAATATGTTAAGGCATTGGTCAGAGTTGACAGGCTGGATGACAGCGAGTTGCTGAAGACCCTGCAGAGAGGTATTTCCAACTCAGCAAGGGAAG AGGAAAGTATAGGAGGTCTTTCAGTTTTCAGGAATGTGGGAAAATCTACAAAAGATGGTGTTCTTGGAACTGCTGGCACACCTATTCACATGGTGGCTAC AGAAGGAGGGCATTTTAAAGAGCAGCTTTGGCGTACAATCCGCACTATCGCGCTGGCCTTTCTGTTGATTTCTGGTGTGGGCGCTCTTATTGAGGACAGA GGAATCAGTAAAGGACTTGGTCTAAATGAGGAGGTGCAGCCTAGCATGGAATCTAACACCAAATTTAATGATGTAAAGGGTGTCGATGAGGCAAAGGCAG AACTAGAAGAAATTGTCCACTATCTTCGAGATCCAAAGCGCTTCACTCGTCTAGGTGGCAAGCTCCCTAAAGGTGTTTTGCTTGTTGGACCACCTGGCAC TGGCAAGACAATGTTAGCCAGAGCTATTGCTGGAGAAGCTGGGGTTCCTTTTTTCTCATGCAGTGGCAGTGAGTTTGAGGAGATGTTTGTTGGAGTTGGA GCTCGAAGGGTGAGGGATCTTTTTTCTGCTGCAAAGAAGCGGTCACCATGTATAATATTTATTGATGAGATAGACGCTATTGGAGGAAGCCGCAACCCGA AGGACCAACAGTACATGAAAATGACTTTGAATCAGTTGCTTGTTGAATTGGATGGATTTAAGCAAAATGAAGGTATCATTGTGATCGCGGCGACGAATTT TCCAGAATCACTGGACAAGGCACTGGTGAGACCTGGACGGTTTGACCGCCACATTGTTGTTCCTAATCCAGATGTAGAAGGCAGGCGGCAGATTATGGAA TCCCACATGTCAAAGATCTTGAAGGGTGAAGATGTTGATTTGATGATTATTGCTAGAGGGACTCCTGGTTTCTCTGGTGCTGATCTCGCAAATTTGGTCA ACATTGCTGCTCTCAAGGCTGCTATGGATGGTGCTAAATCAGTGACCATGACTGATCTAGAATATGCAAAGGACAAGATCATGATGGGAAGTGAGCGCAA GTCAGCTGTAATTTCTGCCGAGTCACGGAAGCTGACGGCTTTCCATGAGGGTGGGCATGCCCTTGTGGCCATCCATACTGAAGGGGCTCTTCCTGTTCAC AAGGCAACAATAGTTCCCAGAGGTATGTCTCTTGGCATGGTTGCCCAATTGCCCGACAAGGATGAGACAAGTGTATCTCTCAAGCAAATGCTTGCTCGGT TAGATGTTTGCATGGGGGGTCGGGTTGCAGAAGAGCTGATTTTTGGAGAAAACGAAGTTACCTCAGGTGCTTCTTCTGATCTCCAGCAAGCTACTAATCT TGCTAGAGCAATGGTTACAAAGTTCGGCATGAGTAAAGAAGTTGGAGTTGTCACCCACAATTATGATGACAATGGGAAGAGCATGAGTACTGAGACTAGG CTTCTTATTGAGAAAGAAGTGAAATATTTCCTGGAAAGGGCTTACAACAATGCAAAAAAAATCCTCACCACCAACAGCAAGGAGCTTCATGCGCTTGCTA ATGCTTTGCTTGAGCAAGAAACGCTCTCAGGGAGTCAGATCAAGGCTCTGCTTGCCCAAGTCAATTCTCAGCAGCAGCGGCAACAGCCGCAGCAGCAGCA GATAGTTGCATCACACAGCAGTTCACAGTCCAACCCTGTGCCCCCCTCGACCCCTAATCCAGCTGCATCTGCCGCCGCTGCAGCCGCCGCCGCCGCCGCA AATGCAGCAGCTAAAGCTAAAGGCATTGCTCCTGTTGGATCTTAG
AA sequence Show only first row Show all	>Potri.006G227700.3 pacid=42770561 polypeptide=Potri.006G227700.3.p locus=Potri.006G227700 ID=Potri.006G227700.3.v4.1 annot-version=v4.1 MAWRRLITQVSRHQSELGQFKNLFVRTYFPINKFGGSVGNRILNAERRFQSSYVGNLARRMRDMDDGSEVLQLKELLRHDPEAVIRLFESQPSLYGNPSA LSEYVKALVRVDRLDDSELLKTLQRGISNSAREEESIGGLSVFRNVGKSTKDGVLGTAGTPIHMVATEGGHFKEQLWRTIRTIALAFLLISGVGALIEDR GISKGLGLNEEVQPSMESNTKFNDVKGVDEAKAELEEIVHYLRDPKRFTRLGGKLPKGVLLVGPPGTGKTMLARAIAGEAGVPFFSCSGSEFEEMFVGVG ARRVRDLFSAAKKRSPCIIFIDEIDAIGGSRNPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQIME SHMSKILKGEDVDLMIIARGTPGFSGADLANLVNIAALKAAMDGAKSVTMTDLEYAKDKIMMGSERKSAVISAESRKLTAFHEGGHALVAIHTEGALPVH KATIVPRGMSLGMVAQLPDKDETSVSLKQMLARLDVCMGGRVAEELIFGENEVTSGASSDLQQATNLARAMVTKFGMSKEVGVVTHNYDDNGKSMSTETR LLIEKEVKYFLERAYNNAKKILTTNSKELHALANALLEQETLSGSQIKALLAQVNSQQQRQQPQQQQIVASHSSSQSNPVPPSTPNPAASAAAAAAAAAA NAAAKAKGIAPVGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26140		FTSH4	FTSH protease 4 (.1)		Potri.006G227700 [exp]	0	1	Pt-FTSH4.1
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Potri.007G027600 [exp]	4.35	0.8876
AT4G12640			RNA recognition motif (RRM)-co...		Potri.014G171900 [exp]	4.69	0.8631
					Potri.001G371500 [exp]	6.00	0.8609
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Potri.005G069000 [exp]	8.00	0.8534
AT1G29260		PEX7, ATPEX7	ARABIDOPSIS PEROXIN 7, peroxin...		Potri.004G057600 [exp]	8.24	0.7667	PEX7.1
AT1G15060			Uncharacterised conserved prot...		Potri.008G124400 [exp]	8.36	0.8343
AT2G04520			Nucleic acid-binding, OB-fold-...		Potri.014G093801 [exp]	9.74	0.8465
AT2G39950			unknown protein		Potri.008G064500 [exp]	12.00	0.8245
AT3G54540		ABCF4, ATGCN4	ATP-binding cassette F4, gener...		Potri.010G254400 [exp]	13.26	0.7140
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Potri.016G096400 [exp]	13.41	0.8257

Compare expression of checked genes

Potri.006G227700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.