Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11910 363 / 7e-127 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G47590 337 / 2e-116 alpha/beta-Hydrolases superfamily protein (.1) AT3G47560 321 / 9e-111 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G29840 317 / 3e-109 alpha/beta-Hydrolases superfamily protein (.1) AT2G19550 278 / 3e-93 alpha/beta-Hydrolases superfamily protein (.1) AT1G29830 62 / 9e-11 Magnesium transporter CorA-like family protein (.1.2.3) AT4G17150 49 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39400 46 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G14290 46 / 2e-05 alpha/beta-Hydrolases superfamily protein (.1) AT3G23540 43 / 0.0002 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068000 [exp] 359 / 2e-125 AT3G47590 360 / 4e-125 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G032500 [exp] 352 / 7e-123 AT3G47590 347 / 9e-121 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G000700 [exp] 52 / 2e-07 AT4G17150 608 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.016G001000 [exp] 49 / 2e-06 AT4G17150 644 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G029200 [exp] 47 / 8e-06 AT4G14290 680 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G200400 [exp] 45 / 5e-05 AT4G14290 672 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013517 [exp] 376 / 2e-132 AT5G11910 351 / 2e-122 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10012836 [exp] 343 / 1e-118 AT3G47590 359 / 1e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10001114 [exp] 54 / 5e-08 AT4G14290 696 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041237 [exp] 49 / 2e-06 AT4G14290 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10034017 [exp] 47 / 8e-06 AT4G14290 667 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.006G227900.2 pacid=42769581 polypeptide=Potri.006G227900.2.p locus=Potri.006G227900 ID=Potri.006G227900.2.v4.1 annot-version=v4.1 ATGACTCAGTCCCTTGCAAACCGAGCTGTCCAACAACGGAGAGTTGTTATAGAGAACAACCATGGCGAGAAGCTCTCTGGGATATTACATGAAACTGGTT CTAAACAGCTTGTTATTGTGTGCCATGGATTTCAGTCGTCAAAGGAACGGATACCAATGGTAAACCTCGCCGCTGCTCTGGAGAAAGAAGGAATCAGTGC CTTCCGTTTTGACTTTGCTGGAAATGGGGAAAGTGAAGGCTCATTTCAGTATGGTAACTACCGTAGAGAAGCTGAGGATTTACGTGCTGTGGTTCAACAT TTTCGTAGGGAGAATCGTGTGATAAGTGCAGTTATTGGACACAGTAAAGGTGGAAATGTGGTGCTCTTGTATGCTTCGAAGTACAATGATGTCCATGCAG TGGTTAATATTTCTGGCCGGTTTAACCTGGAGAAAGGCATGGAAGGCCGCCTGGGTAAAGACTTTCTGCTAAGACTCAAACAACATGGATATATAGATGT CTTTAATAGAAAAGGAAAATTCGAGTATCGTGTGACTGAAGAAAGTTTGAAGGATCGATTAACTACTGACATCCATGCAGTCTGCTTGTTGATTCAACAA GAGTGCAGGGTATTGACAGTCCATGGATCCATGGATAAATTTGTACCGGCTGAAGATGCTTTGGAATTTGCCAAGTTCATACCAAATCATAAACTACACA TCATAAAGGGAGCTAATCATGAATATACTTCACATCAAGGCGAGTTAACTTCGGTTGTACTAGATTTCTTGAGGGAAAATTTTAATGCAGAAAAAGACAT GCCTAAGTTACCATTGAAGGATCATCCTTTTCGTTCTCGACTGTGA
AA sequence Show only first row Show all	>Potri.006G227900.2 pacid=42769581 polypeptide=Potri.006G227900.2.p locus=Potri.006G227900 ID=Potri.006G227900.2.v4.1 annot-version=v4.1 MTQSLANRAVQQRRVVIENNHGEKLSGILHETGSKQLVIVCHGFQSSKERIPMVNLAAALEKEGISAFRFDFAGNGESEGSFQYGNYRREAEDLRAVVQH FRRENRVISAVIGHSKGGNVVLLYASKYNDVHAVVNISGRFNLEKGMEGRLGKDFLLRLKQHGYIDVFNRKGKFEYRVTEESLKDRLTTDIHAVCLLIQQ ECRVLTVHGSMDKFVPAEDALEFAKFIPNHKLHIIKGANHEYTSHQGELTSVVLDFLRENFNAEKDMPKLPLKDHPFRSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11910			alpha/beta-Hydrolases superfam...		Potri.006G227900 [exp]	0	1
AT1G65560			Zinc-binding dehydrogenase fam...		Potri.010G177700 [exp]	4.35	0.8085
AT5G03080			Phosphatidic acid phosphatase ...		Potri.006G130700 [exp]	5.74	0.8045
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Potri.007G022700 [exp]	10.00	0.7952
AT4G09830			Uncharacterised conserved prot...		Potri.001G003400 [exp]	15.09	0.7943
AT1G49510		EMB1273	embryo defective 1273 (.1)		Potri.005G149500 [exp]	29.46	0.7980
AT1G17100			SOUL heme-binding family prote...		Potri.001G067100 [exp]	29.73	0.7566
AT2G17695			unknown protein		Potri.005G105500 [exp]	35.49	0.7697
AT1G29040			unknown protein		Potri.011G064600 [exp]	37.94	0.7271
AT5G17570			TatD related DNase (.1)		Potri.013G073800 [exp]	47.37	0.7198
AT4G23900			Nucleoside diphosphate kinase ...		Potri.001G091001 [exp]	48.09	0.7718

Compare expression of checked genes

Potri.006G227900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.