Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33030 750 / 0 SQD1 sulfoquinovosyldiacylglycerol 1 (.1) AT4G10960 49 / 6e-06 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT1G63180 48 / 1e-05 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT4G23920 48 / 1e-05 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT1G12780 43 / 0.0004 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G64440 42 / 0.001 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090700 [exp] 50 / 2e-06 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G140900 [exp] 48 / 7e-06 AT4G10960 606 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G123700 [exp] 47 / 2e-05 AT1G12780 641 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013513 [exp] 732 / 0 AT4G33030 729 / 0.0 sulfoquinovosyldiacylglycerol 1 (.1) Lus10024985 [exp] 728 / 0 AT4G33030 726 / 0.0 sulfoquinovosyldiacylglycerol 1 (.1) Lus10032973 [exp] 169 / 4e-51 AT4G33030 176 / 1e-54 sulfoquinovosyldiacylglycerol 1 (.1) Lus10003875 [exp] 55 / 6e-08 AT4G10960 616 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10001822 [exp] 50 / 2e-06 AT4G10960 615 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10023074 [exp] 49 / 7e-06 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.006G228000.2 pacid=42768139 polypeptide=Potri.006G228000.2.p locus=Potri.006G228000 ID=Potri.006G228000.2.v4.1 annot-version=v4.1 ATGGCTCATCTGCTTTCCACTTCTTGCTCGATAAAGTTGTCATCAAGCCACAGACCTTTATCTCAGCCATTTCGTCAATGCCCAACGAAGTGCCTTACAT TTTTTACGCTGGGAACTTCAAAATCTCCATTTAAAAGGTTTGTTTTGCAAGGAGGAACACAGCAAGCAAGCTGTGTTGTCCGTGCAACCGTGGCTCCTAT AAGCCAAGAAACACCAACTCAATCCAGCTCTGATTCTCGACAGAAGTCCAGTGAACCATCCAAGCCAAAGCGGGTCATGGTTATTGGTGGAGATGGCTAC TGTGGTTGGGCCACTGCCCTCCACTTATCCAACAAAGGTTATGAGGTTGCTATCGTTGACAGCCTCATTCGTCGTCTCTTTGACCAACAACTCGGTCTAG ACTCCCTGACTCCTATTGCTTCTATCCACAACCGTCTCCGTTGTTGGCGATCAGTCACTGGAAAAACAATTGAACTCTATATTGGTGACATTTGTGACTT TGAGTTCCTGTCAGAAACCTTCAAGTCTTTTGAACCTGATGCTGTAGTCCATTTTGGGGAACAACGGTCTGCCCCGTATTCAATGATTGATCGGAACAGA GCTGTTTTTACTCAGCACAACAATGTGATCGGAACACTTAATGTGCTCTTTGCTATAAAGGAATTCAGGGATCAGTGCCATCTGGTGAAACTTGGGACAA TGGGAGAGTATGGAACACCAAACATTGATATTGAGGAGGGTTATATAACTATTACTCATAATGGAAGAACAGATACTTTGCCTTTCCCCAAGCAAGCCAG CTCTTTCTACCATCTTAGTAAGGTCCATGACTCAAATAATATAGCCTTCACTTGCAAGGCTTGGGGAATTAGAGCAACTGATTTGAATCAAGGAGTGGTT TATGGAGTAAGGACAGATGAGACTGAGATGCACGAAGAGCTCTGTAACAGGCTTGATTATGATGGAGTGTTCGGAACTGCATTGAATCGGTTTTGTGTCC AGGCTGCAGTTGGTCATCCACTTACTGTTTATGGAAAGGGGGGTCAGACCAGGGGCTACCTTGACATAAGAGACACTGTCCAGTGTGTTGAACTTGCCAT TGCCAACCCGGCACAGCCTGGTGAATTTCGGGTCTTCAATCAATTTACTGAGCAATTTTCTGTCAACGAACTTGCTTCTCTTGTTACAAAAGCTGGAGAG AAGTTAGGGCTTGATGTGAAAACCATATCTGTGCCCAACCCAAGAGTAGAGGCAGAAGAGCATTACTACAATGCCAAGCACACAAAGCTCATTGAGTTAG GGCTCGAACCACACCTTCTTTCAGATTCTCTTCTTGACTCTTTGCTCAATTTTGCCATCAAATTCAAGGATCGGGTTGATACAAAACAAATAATGCCCAG TGTTTCTTGGAAAAAGATTGGTGTGAAGCCAAAGACTCTTGCAGCTTAA
AA sequence Show only first row Show all	>Potri.006G228000.2 pacid=42768139 polypeptide=Potri.006G228000.2.p locus=Potri.006G228000 ID=Potri.006G228000.2.v4.1 annot-version=v4.1 MAHLLSTSCSIKLSSSHRPLSQPFRQCPTKCLTFFTLGTSKSPFKRFVLQGGTQQASCVVRATVAPISQETPTQSSSDSRQKSSEPSKPKRVMVIGGDGY CGWATALHLSNKGYEVAIVDSLIRRLFDQQLGLDSLTPIASIHNRLRCWRSVTGKTIELYIGDICDFEFLSETFKSFEPDAVVHFGEQRSAPYSMIDRNR AVFTQHNNVIGTLNVLFAIKEFRDQCHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPFPKQASSFYHLSKVHDSNNIAFTCKAWGIRATDLNQGVV YGVRTDETEMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNELASLVTKAGE KLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLEPHLLSDSLLDSLLNFAIKFKDRVDTKQIMPSVSWKKIGVKPKTLAA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Potri.006G228000 [exp]	0	1
AT3G25480			Rhodanese/Cell cycle control p...		Potri.002G239800 [exp]	3.46	0.9599
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.011G106100 [exp]	5.29	0.9580
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.004G013300 [exp]	6.00	0.9521
AT1G54500			Rubredoxin-like superfamily pr...		Potri.005G049000 [exp]	6.92	0.9612
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.003G191000 [exp]	8.83	0.9592
AT3G45050			unknown protein		Potri.009G008400 [exp]	10.53	0.9441
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Potri.015G101100 [exp]	11.13	0.9460	Pt-GSA1.1
AT1G27385			unknown protein		Potri.003G172000 [exp]	14.07	0.9536
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.008G118700 [exp]	15.49	0.9592
AT3G57190		PrfB3	peptide chain release factor 3...		Potri.006G045200 [exp]	15.68	0.9313

Compare expression of checked genes

Potri.006G228000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.