Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46210 620 / 0 AtSLD2 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) AT3G61580 610 / 0 AtSLD1 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) AT5G53560 72 / 6e-15 B5#2, ATB5-A, ATCB5-E ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) AT2G32720 67 / 3e-13 B5 #4, B5#4, ATCB5-B ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) AT1G26340 66 / 5e-13 B5 #6, B5#6, ATCB5-A ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) AT5G48810 65 / 2e-12 B5#3, ATB5-B, ATCB5-D ARABIDOPSIS CYTOCHROME B5 ISOFORM D, cytochrome B5 isoform D (.1) AT1G37130 60 / 3e-09 NIA2-1, CHL3, B29, NR2, NIA2, ATNR2 CHLORATE RESISTANT 3, ARABIDOPSIS NITRATE REDUCTASE 2, nitrate reductase 2 (.1) AT1G77760 59 / 4e-09 GNR1, NIA1 nitrate reductase 1 (.1) AT1G60660 53 / 2e-08 B5 #5, B5#5, ATCB5LP ARABIDOPSIS CYTOCHROME B5-LIKE PROTEIN, cytochrome B5-like protein (.1) AT5G09680 53 / 1e-07 RLF reduced lateral root formation (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G165800 [exp] 659 / 0 AT2G46210 728 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.014G091800 [exp] 645 / 0 AT2G46210 721 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Potri.002G242500 [exp] 65 / 2e-12 AT2G32720 221 / 7e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.010G156900 [exp] 63 / 8e-12 AT1G26340 166 / 4e-54 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Potri.012G024600 [exp] 62 / 2e-11 AT5G53560 163 / 5e-53 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.017G054300 [exp] 60 / 1e-10 AT2G32720 221 / 6e-76 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.015G007600 [exp] 59 / 1e-10 AT5G53560 153 / 8e-49 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Potri.001G314200 [exp] 59 / 2e-10 AT2G32720 199 / 3e-67 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Potri.002G088600 [exp] 58 / 1e-08 AT1G77760 1394 / 0.0 nitrate reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035482 [exp] 688 / 0 AT3G61580 659 / 0.0 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) Lus10031102 [exp] 686 / 0 AT3G61580 659 / 0.0 sphingoid LCB desaturase 1, Fatty acid/sphingolipid desaturase (.1) Lus10036408 [exp] 619 / 0 AT2G46210 700 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Lus10041083 [exp] 533 / 0 AT2G46210 595 / 0.0 sphingoid LCB desaturase 2, Fatty acid/sphingolipid desaturase (.1) Lus10011858 [exp] 66 / 9e-13 AT2G32720 211 / 5e-72 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10022794 [exp] 65 / 2e-12 AT2G32720 211 / 1e-71 ARABIDOPSIS CYTOCHROME B5 ISOFORM B, cytochrome B5 isoform B (.1) Lus10000651 [exp] 64 / 5e-12 AT1G26340 194 / 7e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10036973 [exp] 63 / 9e-12 AT1G26340 193 / 8e-65 ARABIDOPSIS CYTOCHROME B5 ISOFORM A, cytochrome B5 isoform A (.1) Lus10008838 [exp] 62 / 2e-11 AT5G53560 232 / 3e-80 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1) Lus10022357 [exp] 61 / 4e-11 AT5G53560 231 / 2e-79 ARABIDOPSIS CYTOCHROME B5 ISOFORM E, cytochrome B5 isoform E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [poplar] [flax] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain PF00487 [poplar] [flax] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Potri.006G228200.1 pacid=42766892 polypeptide=Potri.006G228200.1.p locus=Potri.006G228200 ID=Potri.006G228200.1.v4.1 annot-version=v4.1 ATGGCGGAGACAAGGAGGTACATTACAAAAGAAGAGCTTGAAAAGCACAACACAGCAGGAGATCTATGGATCTCTATACAAGGCAAGATCTACAATGTCA CTTACTGGGCTAATGACCACCCTGGAGGCCAGCTTCCATTGTTGAGTCTTGCAGGCCAAGATGTCACTGATGCGTTTGTTGCTTACCATCCAGGGACTGC GTGGAAATACCTTGACAAATTCTTTACCGGGTTTTATCTCAAAGACTACACTGTTAGTGAGGTATCGGAAGATTTTAGAAAACTCGCTGCCGAGTTCTCA AAATCGGGTCTTTTTGAGAAAAAAGGACATGTGGTGTTTGTTACTCTTTGTTTAGTTGTAATGATGTTTTGTCTCAGTGTTTATGGTGTTTTGTGCTCTG ATAGTAGATCGGTTCGTTTAGTTTGTGGTGGGTTAATGGGGCTTATGTGGATACAAAGTGGGTGGATTGGGCATGATTCAGGTCATTATCAGGTTATGAG TAGCCGTGGATTCAATTGTCTTGTGCAGATCTTAAGTGGGAATTGCCTTGCAGGGGTTGGTATTGGATGGTGGAAGTGTAACCATAATGCACATCACATT GCTTGTAATAGTCTTGATTATGATCCAGATCTGCAGCACATGCCTTTTTTCGCGGTATCTTCTAAGTTTTTCAGTTCAATTACTTCTTGTTTTTATGATA GGAAGTTGAATTTCGATTCTGTTTCTAGGTTCTTGGTTAGTTATCAACATTGGACATTTTATCCTGTAATGTGTTTGGCGAGGATTAATTTGTTTGCGCA GTCTTTCTTGATTTTGTTATCTAAGAAAAAATTGTCGACTAATAGGGGCCTGGAGTTTTTGGGTTTAGTTGTGTTCTGGACTTGGTATCCTCTGCTTGTT TCCTGCTTGCCCAGTTGGGGGGAGAGAATCATTTTTGTTGTTGCCAGTTTTAGTGTTACTGGGATTCAGCATGTTCAGTTCTGTCTGAATCATTTCTCAT CAAGTGTTTATGTTGGTCCGCCTAGTGGGAATAATTGGTTTGAGAAACAAACTGAGGGAACATTGAATATATCATGCTCGCCTTGGATGGATTGGTTTCA TGGTGGATTGCAATTTCAGGTTGAGCACCATCTCTTTCCCCGTTTGCCTCGATGCCAACTTAGAAGAGTCTCACCGTTCATCAGGGAGCTTTGTAAGAAG CATAATTTGCCATACAATATCGTATCATTCTGGAAGGCCAATGCAATGACCTTGGAGACTCTCCGGACTGCAGCCTTGCAAGCTAGGGATCTTACCAATC CTGTTCCTAAGAATTTGGTGTGGGAAGCTGTTAATACTCATGGATGA
AA sequence Show only first row Show all	>Potri.006G228200.1 pacid=42766892 polypeptide=Potri.006G228200.1.p locus=Potri.006G228200 ID=Potri.006G228200.1.v4.1 annot-version=v4.1 MAETRRYITKEELEKHNTAGDLWISIQGKIYNVTYWANDHPGGQLPLLSLAGQDVTDAFVAYHPGTAWKYLDKFFTGFYLKDYTVSEVSEDFRKLAAEFS KSGLFEKKGHVVFVTLCLVVMMFCLSVYGVLCSDSRSVRLVCGGLMGLMWIQSGWIGHDSGHYQVMSSRGFNCLVQILSGNCLAGVGIGWWKCNHNAHHI ACNSLDYDPDLQHMPFFAVSSKFFSSITSCFYDRKLNFDSVSRFLVSYQHWTFYPVMCLARINLFAQSFLILLSKKKLSTNRGLEFLGLVVFWTWYPLLV SCLPSWGERIIFVVASFSVTGIQHVQFCLNHFSSSVYVGPPSGNNWFEKQTEGTLNISCSPWMDWFHGGLQFQVEHHLFPRLPRCQLRRVSPFIRELCKK HNLPYNIVSFWKANAMTLETLRTAALQARDLTNPVPKNLVWEAVNTHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G46210		AtSLD2	sphingoid LCB desaturase 2, Fa...		Potri.006G228200 [exp]	0	1
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Potri.006G086100 [exp]	1.00	0.9255	EXPA3.1,PtEXPA16
AT3G24240			Leucine-rich repeat receptor-l...		Potri.005G117700 [exp]	1.41	0.9221
AT3G18050			unknown protein		Potri.015G040900 [exp]	2.00	0.9105
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	3.00	0.9208
AT5G55360			MBOAT (membrane bound O-acyl t...		Potri.006G009600 [exp]	3.46	0.8676
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	3.87	0.8988
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Potri.017G099100 [exp]	4.47	0.8736
AT5G45280			Pectinacetylesterase family pr...		Potri.003G046200 [exp]	4.58	0.8558
AT3G08030			Protein of unknown function, D...		Potri.001G263900 [exp]	5.65	0.8788
AT4G04930		DES-1-LIKE	fatty acid desaturase family p...		Potri.011G050800 [exp]	6.16	0.8581

Compare expression of checked genes

Potri.006G228200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.