Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68400 357 / 5e-114 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G26730 309 / 4e-96 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 307 / 4e-95 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 298 / 7e-92 Leucine-rich repeat protein kinase family protein (.1.2) AT4G23740 291 / 2e-89 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 276 / 6e-84 Leucine-rich repeat protein kinase family protein (.1.2) AT1G48480 270 / 4e-81 RKL1 receptor-like kinase 1 (.1) AT3G17840 265 / 2e-79 RLK902 receptor-like kinase 902 (.1) AT1G64210 253 / 2e-75 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 249 / 9e-74 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G121700 [exp] 345 / 2e-109 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G131500 [exp] 315 / 2e-98 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 309 / 3e-96 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 307 / 3e-95 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 298 / 6e-92 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G136100 [exp] 290 / 6e-89 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G117200 [exp] 289 / 3e-88 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G095200 [exp] 288 / 3e-88 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G023500 [exp] 278 / 4e-84 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035138 [exp] 339 / 1e-106 AT1G68400 746 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10021673 [exp] 310 / 2e-96 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 310 / 3e-96 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017178 [exp] 305 / 5e-94 AT2G36570 872 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 300 / 2e-92 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 297 / 2e-91 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10021131 [exp] 296 / 2e-90 AT2G36570 851 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10034446 [exp] 291 / 3e-89 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10032351 [exp] 289 / 9e-89 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10027568 [exp] 283 / 1e-86 AT4G23740 652 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G228400.1 pacid=42768756 polypeptide=Potri.006G228400.1.p locus=Potri.006G228400 ID=Potri.006G228400.1.v4.1 annot-version=v4.1 ATGTTGTCCAAACAAAACTTTCTTTCTATCTTCTTCTTCTTCTCTTGCATCTTCTCTAGTTCTTTATCGAACCCGGATTTTATTACATTACTCTCTTTCA AATCCTCCTTGTTAGACTCATCAAACGCGTTATCCACCTGGGTCAACTCAACTAACCCGTGCATTGATTCCTGGCTTGGTGTCACATGCCATCCCACAAC TCACCGAGTCACGAAACTGGTACTTGAGAACTTGAATCTTACCGGTTCGATCGACGCTCTGAGTCAACTCACTCAACTCAGACTCTTAAGCTTAAAACAA AACCACCTCTCCTCTGCTTTCGATTTGAACTTTTCTTCTTTGAAAAGCCTCAAGCTTCTTTACCTCTCTCACAACCGCCTTTCCGGAAACTTCCCCTCTG GAATCCACTCCCTTCGGCGTCTCCGGAGGCTCGACCTTTCCTATAATTACTTTTATGGCGAGATTCCATTTCCAGAGTTGGCTCAGATGCCTCGGCTACT AACTCTTCGTCTCGATTTCAACTCATTCACTGGGAAAATCGGACCTTTCAGCCTTTTCCCATCTGGTTCAATCCTGGAATTCAATGTTTCCAATAATTTT CTCTCCGGCGAGATTCCGGCGATATTTTCACGTTTCCCGGTGAGTTCTTTTTCCGGAAATAAGAATCTTTGTGGTAAACCGCTGGCGTTGGATTGTTTTC ATCGGACAGTGGAGAGTGAGCCAGCAAAACCAGGTGATGTAGGAATGAAGAATAAAAAGAAGAAGGGAGTGAGTGACTGGGCGGTGTTTCTGATCATCAC TGTCGATGCGGTTACCATTTTGGCAGCGCTCGTGACCATCACGTGCTGCTGTTACTTTAAAAAAAGACGAAACAGTGGGGCCCAGGAGAGAATTAAAAGG AAAGTTAGGCCAGCAGGTTCCCTCAATTCAATGGGTGGATTTTACGGTGCTGGTGCTGGTGGTGGCCGTGACGAGGTGATGGTGGTGTTTGATGGGTGCA AGGGTTTTGGTGATGTGGATGATTTGTTGAAGTCATCAGCTGAGTTGTTAGGAAAAGGATTTGCGGGGACCACTTATAAGGTGGTGGTGGATGGCGGTGA TATGATGGTTGTTAAGAGGGTGAGAGAGAGGAGAAAGAGAAAGGAGGTTGATAGCTGGTTGAGGATAATTGGTGGGCTAAGGCATTCTAACATTGTGAGC TTAAGAGCTTATTATGATTCTAATGAGGAGTTGCTTTTGGTCTATGATTTTCTACCAAATGGAAGCTTACACTCTCTCTTGCATGGGAACAGAGGACCAG GGAGGACTCCATTGGACTGGACAACAAGGTTAAAACTAGCATCAGGTTCTGCACTTGGCCTTGCATTTCTGCATGGCTACAACAAAGCCAAGCATTTCCA TGGGAACCTAACATCATCAAACATCGTAGTTGATCACTTGGGAAATGCTTGTGTTTCTGACATTGGTCTCCACCAACTCCTGCATGCCGCATCTATCTCA AACAATGGCTACAAGGCTCCAGAACTAATGCCTAACAACCAGAATAATGTCAGCCAGAGAAGGTTTACACAAAAATGTGATGTATATAGCTTTGGGGTGA TTTTGCTTGAGATACTGACAGGAAAAATGCCAAATGGAGAGGGAGAAACAAGTTTAGTGAAGTGGGTTCAAAGAGTGGCAAGAGAAGAGTGGACTTGGGA GGTGTTTGATTTTGAGTTGTTGAGGTATAAGGAAATGGAGGAGGAAATGGTTGGTCTTATGCAAGTAGCTTTGCTTTGCTTGGCTCCATTTCCAAGAGAC CGTCCAAAGATGAGCATGGTGCATATGATGATTGAAGATATTAGGACCAAGGGTGGAAGACAATTAGGTGACCGGAGTTCTATTATGAATGATCTGTCTT CTGATTCATCTCCTTCTCTATCAGAAAGCACCCTCAATTTCACCAGTGGGAGTTGA
AA sequence Show only first row Show all	>Potri.006G228400.1 pacid=42768756 polypeptide=Potri.006G228400.1.p locus=Potri.006G228400 ID=Potri.006G228400.1.v4.1 annot-version=v4.1 MLSKQNFLSIFFFFSCIFSSSLSNPDFITLLSFKSSLLDSSNALSTWVNSTNPCIDSWLGVTCHPTTHRVTKLVLENLNLTGSIDALSQLTQLRLLSLKQ NHLSSAFDLNFSSLKSLKLLYLSHNRLSGNFPSGIHSLRRLRRLDLSYNYFYGEIPFPELAQMPRLLTLRLDFNSFTGKIGPFSLFPSGSILEFNVSNNF LSGEIPAIFSRFPVSSFSGNKNLCGKPLALDCFHRTVESEPAKPGDVGMKNKKKKGVSDWAVFLIITVDAVTILAALVTITCCCYFKKRRNSGAQERIKR KVRPAGSLNSMGGFYGAGAGGGRDEVMVVFDGCKGFGDVDDLLKSSAELLGKGFAGTTYKVVVDGGDMMVVKRVRERRKRKEVDSWLRIIGGLRHSNIVS LRAYYDSNEELLLVYDFLPNGSLHSLLHGNRGPGRTPLDWTTRLKLASGSALGLAFLHGYNKAKHFHGNLTSSNIVVDHLGNACVSDIGLHQLLHAASIS NNGYKAPELMPNNQNNVSQRRFTQKCDVYSFGVILLEILTGKMPNGEGETSLVKWVQRVAREEWTWEVFDFELLRYKEMEEEMVGLMQVALLCLAPFPRD RPKMSMVHMMIEDIRTKGGRQLGDRSSIMNDLSSDSSPSLSESTLNFTSGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68400			leucine-rich repeat transmembr...		Potri.006G228400 [exp]	0	1
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	2.64	0.8851
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Potri.006G193900 [exp]	6.16	0.8295
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Potri.001G092200 [exp]	17.02	0.8760
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	19.62	0.8365
AT5G56790			Protein kinase superfamily pro...		Potri.001G035900 [exp]	25.33	0.8643
AT1G11545		XTH8	xyloglucan endotransglucosylas...		Potri.004G021000 [exp]	28.28	0.8376
AT5G11420			Protein of unknown function, D...		Potri.018G031100 [exp]	36.74	0.8488
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	44.73	0.8256
AT3G51470			Protein phosphatase 2C family ...		Potri.007G058700 [exp]	58.34	0.7839
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.014G073000 [exp]	65.26	0.8291

Compare expression of checked genes

Potri.006G228400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.