Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60340 228 / 5e-77 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109400 [exp] 339 / 3e-121 AT5G60340 231 / 4e-78 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016525 [exp] 271 / 2e-94 AT5G60340 261 / 4e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10040792 [exp] 266 / 5e-92 AT5G60340 258 / 8e-89 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF13238 [poplar] [flax] AAA_18 AAA domain
Representative CDS sequence Show only first row Show all	>Potri.006G228500.13 pacid=42769568 polypeptide=Potri.006G228500.13.p locus=Potri.006G228500 ID=Potri.006G228500.13.v4.1 annot-version=v4.1 ATGGCACAAGGAGATAGTGACATGAGGAAGAAACCAAACATATTGATAACTGGCACACCCGGAACTGGAAAAACAACTACCGCATCTGCTCTGGCAGAGG CCACCCAGTTCCGCCACATTAATATTGGAGATTTGGTCAAAGAGAAGAACTTGCATGATGGATGGGATGACCAGTTTGACTGCTACATAATTAATGAAGA CCTGGTGTGTGATGAACTCGAAGATATAATGGAAGAAGGTGGAAACATAGTGGACTATCATGGTTGTGATTTCTTTCCAGAGCGATGGTTTGATCAAGTT GTGGTTCTGCAAACTGACAATTCTGTTTTGTACGATCGTTTAAGCAAGAGAGGTTACTCAGAGACGAAGATATCCAACAACATGGAATGTGAAATCTTCC AAGTCCTGTTGGAGGAGGCAAAAGAAAGTTATCCAGAAGGCATTGTGGTGGCGTTAAGGAGTGATTCCATCGACGACATCACCAACAACATTGCCACTCT GACTCACTGGCTCACCACTTGGCAAAATGTTCCATAG
AA sequence Show only first row Show all	>Potri.006G228500.13 pacid=42769568 polypeptide=Potri.006G228500.13.p locus=Potri.006G228500 ID=Potri.006G228500.13.v4.1 annot-version=v4.1 MAQGDSDMRKKPNILITGTPGTGKTTTASALAEATQFRHINIGDLVKEKNLHDGWDDQFDCYIINEDLVCDELEDIMEEGGNIVDYHGCDFFPERWFDQV VVLQTDNSVLYDRLSKRGYSETKISNNMECEIFQVLLEEAKESYPEGIVVALRSDSIDDITNNIATLTHWLTTWQNVP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60340			P-loop containing nucleoside t...		Potri.006G228500 [exp]	0	1
AT5G09270			unknown protein		Potri.005G066900 [exp]	3.74	0.7532
AT5G36930			Disease resistance protein (TI...		Potri.005G003900 [exp]	5.19	0.7601
					Potri.005G150300 [exp]	5.47	0.7205
					Potri.005G209300 [exp]	6.48	0.7066
AT1G02280		PPI1, ATTOC33, ...	PLASTID PROTEIN IMPORT 1, tran...		Potri.002G183400 [exp]	9.16	0.7199	Pt-PPI1.3
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.004G004900 [exp]	12.12	0.6462
AT3G07500	FAR1_related		Far-red impaired responsive (F...		Potri.014G176500 [exp]	17.32	0.6583
AT1G07830			ribosomal protein L29 family p...		Potri.014G111100 [exp]	24.24	0.6772
AT1G69390		ARC12, ATMINE1	accumulation and replication o...		Potri.010G162600 [exp]	25.23	0.7023
AT2G33630			NAD(P)-binding Rossmann-fold s...		Potri.002G005100 [exp]	25.78	0.6562

Compare expression of checked genes

Potri.006G228500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.