Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11890 172 / 3e-52 EMB3135 EMBRYO DEFECTIVE 3135, unknown protein AT1G17620 125 / 2e-34 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G27080 49 / 9e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT5G53730 48 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01410 48 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G01110 43 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G052500 [exp] 367 / 9e-129 AT5G11890 198 / 3e-62 EMBRYO DEFECTIVE 3135, unknown protein Potri.003G039400 [exp] 162 / 1e-48 AT1G17620 208 / 1e-66 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G200700 [exp] 152 / 4e-45 AT1G17620 168 / 2e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G106100 [exp] 64 / 5e-12 AT4G01410 185 / 7e-59 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G180000 [exp] 62 / 1e-11 AT4G01410 232 / 9e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G167300 [exp] 56 / 6e-09 AT2G46300 177 / 5e-55 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.009G158900 [exp] 52 / 2e-07 AT2G27080 259 / 8e-87 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.009G003800 [exp] 51 / 2e-07 AT5G22870 179 / 4e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.014G094400 [exp] 48 / 3e-06 AT2G46300 174 / 8e-54 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026428 [exp] 249 / 2e-82 AT5G11890 209 / 7e-67 EMBRYO DEFECTIVE 3135, unknown protein Lus10037638 [exp] 158 / 6e-47 AT1G17620 201 / 4e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015622 [exp] 156 / 2e-46 AT1G17620 196 / 5e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10003824 [exp] 145 / 3e-42 AT1G17620 191 / 5e-60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10024987 [exp] 131 / 7e-38 AT5G11890 87 / 5e-21 EMBRYO DEFECTIVE 3135, unknown protein Lus10030193 [exp] 66 / 3e-12 AT4G01410 185 / 3e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10010103 [exp] 57 / 2e-09 AT4G01410 198 / 7e-64 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021404 [exp] 49 / 7e-07 AT5G22870 151 / 6e-46 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10016161 [exp] 48 / 2e-06 AT5G22870 148 / 8e-45 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10032932 [exp] 44 / 6e-05 AT5G53730 211 / 4e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF03168 [poplar] [flax] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Potri.006G228600.1 pacid=42769979 polypeptide=Potri.006G228600.1.p locus=Potri.006G228600 ID=Potri.006G228600.1.v4.1 annot-version=v4.1 ATGTCAGACAAGGTCTTTCCTTCTTCAAAACCAGCAGCCAATGGCACCGCCACGAACCCCACCACAACCACCACAAACAACCCACCACCTGCCACCACAA ACAAATCCCACCTCTACAACCCTACTTCCCGCCTACCTTACCGTCCACAACCTCACACTCGCCGCCACCGTAGCCGTAGTGGCCGAAACATCTGCTGCTG CTGTTGTTTCTGGACAATCCTCACCATCCTCTTGCTCCTCCTCCTCGCTGCCATAGCCGGTGCTGCTCTTTACATCCTTTACCGCCCTCACCGCCCTTCC TTTACCATCACCTCCCTGCGTATCCACCGCCTTAACCTCACCACATCTCCCGACTCCTCCAGTTCCCATCTTTCCACTCTCTTTAACCTCACAATCATTT CCAAGAACCCCAATTCACATATCTCGCTAGACTATGAACCCTTCACTGTTTCTGCATTATCTGATGGTAATGATGTGTTCCTTGGGAATGGTACTTTACC TGCTTTTAGCTTGAGTAAAAAGAACCAGACAAGTTTTAGAAACGTTGTGGTTTCAGGGTCGAATGACCTTGACGTGGATGCAGTAAATTCATTGAGATCG GATCTGAAGAAAAAGAAAAGTGAAAATGGATCGGTAATGTTGAAGATTGAGATGGATACAAAGGTGAAAATGAAGGTGGGTGGATTAAAGACAAAGAAAG TTGGGATAAGAGTTACTTGTGATGGGATCAAAGGGTCTATACCAAAAGGTAAGACACCAACTGTTGCTGTTACTGCTAAGTCTGAGTGTAAGGTTGATCT AAGAATCAAGATTTGGAGGTGGACCTTTTGA
AA sequence Show only first row Show all	>Potri.006G228600.1 pacid=42769979 polypeptide=Potri.006G228600.1.p locus=Potri.006G228600 ID=Potri.006G228600.1.v4.1 annot-version=v4.1 MSDKVFPSSKPAANGTATNPTTTTTNNPPPATTNKSHLYNPTSRLPYRPQPHTRRHRSRSGRNICCCCCFWTILTILLLLLLAAIAGAALYILYRPHRPS FTITSLRIHRLNLTTSPDSSSSHLSTLFNLTIISKNPNSHISLDYEPFTVSALSDGNDVFLGNGTLPAFSLSKKNQTSFRNVVVSGSNDLDVDAVNSLRS DLKKKKSENGSVMLKIEMDTKVKMKVGGLKTKKVGIRVTCDGIKGSIPKGKTPTVAVTAKSECKVDLRIKIWRWTF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.006G228600 [exp]	0	1
AT2G04850			Auxin-responsive family protei...		Potri.014G161700 [exp]	1.00	0.9354
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Potri.007G014400 [exp]	2.82	0.9204
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.011G122900 [exp]	3.46	0.9228	Pt-CIP7.1
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.018G052500 [exp]	5.09	0.9229
AT5G42710			unknown protein		Potri.014G185300 [exp]	5.29	0.9106
AT2G32850			Protein kinase superfamily pro...		Potri.001G228100 [exp]	5.47	0.9163
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Potri.005G117500 [exp]	5.47	0.9112	FAH1.3
AT2G28250		NCRK	Protein kinase superfamily pro...		Potri.004G212600 [exp]	6.16	0.8707
AT1G51630			O-fucosyltransferase family pr...		Potri.010G250600 [exp]	6.85	0.8449
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Potri.015G034700 [exp]	6.92	0.8843	Pt-NCPGS.3

Compare expression of checked genes

Potri.006G228600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.