Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26110 142 / 4e-40 Protein of unknown function (DUF761) (.1) AT5G56980 67 / 2e-12 unknown protein AT4G26130 57 / 3e-09 unknown protein AT4G16790 44 / 8e-05 hydroxyproline-rich glycoprotein family protein (.1) AT5G54300 43 / 0.0002 Protein of unknown function (DUF761) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G053000 [exp] 334 / 9e-115 AT2G26110 167 / 2e-49 Protein of unknown function (DUF761) (.1) Potri.006G152200 [exp] 72 / 2e-14 AT5G56980 103 / 2e-25 unknown protein Potri.001G008080 [exp] 40 / 0.0001 AT2G26110 44 / 2e-06 Protein of unknown function (DUF761) (.1) Potri.008G167200 [exp] 41 / 0.0003 AT4G14380 87 / 2e-21 unknown protein Potri.001G008160 [exp] 39 / 0.0004 AT2G26110 45 / 7e-07 Protein of unknown function (DUF761) (.1) Potri.001G171701 [exp] 39 / 0.0006 AT1G15385 53 / 7e-11 unknown protein Potri.003G079900 [exp] 41 / 0.0008 AT4G16790 114 / 8e-27 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G155000 [exp] 41 / 0.0009 AT4G16790 114 / 5e-27 hydroxyproline-rich glycoprotein family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024988 [exp] 201 / 1e-62 AT2G26110 172 / 1e-51 Protein of unknown function (DUF761) (.1) Lus10026978 [exp] 119 / 5e-32 AT2G26110 122 / 2e-33 Protein of unknown function (DUF761) (.1) Lus10019517 [exp] 109 / 7e-28 AT2G26110 148 / 5e-43 Protein of unknown function (DUF761) (.1) Lus10025985 [exp] 66 / 2e-12 AT5G56980 82 / 4e-18 unknown protein Lus10014282 [exp] 66 / 4e-12 AT5G56980 84 / 1e-18 unknown protein Lus10011818 [exp] 41 / 0.0007 AT4G14380 59 / 3e-10 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Potri.006G228800.1 pacid=42769427 polypeptide=Potri.006G228800.1.p locus=Potri.006G228800 ID=Potri.006G228800.1.v4.1 annot-version=v4.1 ATGCTTGAAGAATCCATATCAATCTGGACTTCTATGAATAGTTGGTTAACCCCAGCTGTTTTCTTTGTTCTTCTCAATCTAATGATTGGCACCATTTTTG TATCTTCAAGACTAGCCACCCAGAAACCTGGTGACCAACGTCAAGAACAAGAAAAACATGTTCAAGCACAGTATGGTCATGGTTACCAGCTTACTAGATC TCCTTCTGTACTACAAAGACTCAAATCTATCAGCTTATATAGCTATAGATCCCAAGAACCTACAACCGTGACTTTCGAAAATCCTCAAGACTCTGACCAA CGTTTCACTTTTCATCAACAGACCTCTCAACAAGATTATCAATACCACCAAAACCAAAACCAAAACCAGCCAACTATTTCTAGTTCTCCTTCGATGTTGC AAAAAATCAAGTCCATCAACCTTTATAGTTACTTATCTCAAGAATCATTTAATCCCACCAGTACTAAAACCCACGAAAACCAAGAAAGCACGCCAACCCA TTTCACTTCTCAACAAATTTATAGCCAAATACAAGAACATGATGAACGGCTCCGAGAAGAAGAAGAGGAGGATAGATTTCAAGACGAAGAAAACGAGCAA ATCCAAGACCAAGAAGAGACTTTTGAAGAGATATACAGCAAGTTACAGGGAGGTAAACTGAGCAAATCCATTTCAGATACAAAACCAACTTCCGGTGAAG TACCCAAAAAGCTACCAAAGAAAATGAGGAAATCTGCAAGCGCAAAATCTGCCTTTTCTCATTTTGAAGAGGAGGACATCGTTGAATCTCGCAGGCCAGC TACTGTGAGAGAAGGGAAGACCACCACCGAGGTTGGTGACACTGAAGTGGATGCTAAAGCTGATGATTTTATATACAAGTTTAAGCAGCAGCTGAAGTTG CAGAGGGTGGATTCTATTATAAGGTACAAAGACACGATTAACGGAGGGAGTTGA
AA sequence Show only first row Show all	>Potri.006G228800.1 pacid=42769427 polypeptide=Potri.006G228800.1.p locus=Potri.006G228800 ID=Potri.006G228800.1.v4.1 annot-version=v4.1 MLEESISIWTSMNSWLTPAVFFVLLNLMIGTIFVSSRLATQKPGDQRQEQEKHVQAQYGHGYQLTRSPSVLQRLKSISLYSYRSQEPTTVTFENPQDSDQ RFTFHQQTSQQDYQYHQNQNQNQPTISSSPSMLQKIKSINLYSYLSQESFNPTSTKTHENQESTPTHFTSQQIYSQIQEHDERLREEEEEDRFQDEENEQ IQDQEETFEEIYSKLQGGKLSKSISDTKPTSGEVPKKLPKKMRKSASAKSAFSHFEEEDIVESRRPATVREGKTTTEVGDTEVDAKADDFIYKFKQQLKL QRVDSIIRYKDTINGGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26110			Protein of unknown function (D...		Potri.006G228800 [exp]	0	1
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.005G170800 [exp]	1.41	0.9089
AT1G20440		AtCOR47, RD17, ...	cold-regulated 47 (.1)		Potri.002G013200 [exp]	5.38	0.9138
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Potri.012G044900 [exp]	14.59	0.8984
					Potri.019G015700 [exp]	14.83	0.8976
AT1G56600		ATGOLS2	galactinol synthase 2 (.1)		Potri.013G005900 [exp]	16.58	0.8964
AT2G27180			unknown protein		Potri.009G151600 [exp]	16.73	0.8937
AT4G33905			Peroxisomal membrane 22 kDa (M...		Potri.009G090600 [exp]	16.91	0.7626
AT1G23040			hydroxyproline-rich glycoprote...		Potri.010G113300 [exp]	19.64	0.7366
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Potri.015G085300 [exp]	19.74	0.8959
AT1G05270			TraB family protein (.1)		Potri.007G121900 [exp]	24.24	0.8527

Compare expression of checked genes

Potri.006G228800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.