Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26100 452 / 1e-159 Galactosyltransferase family protein (.1) AT1G53290 372 / 2e-128 Galactosyltransferase family protein (.1) AT3G14960 365 / 5e-126 Galactosyltransferase family protein (.1) AT1G32930 149 / 2e-41 Galactosyltransferase family protein (.1) AT1G05170 145 / 9e-40 Galactosyltransferase family protein (.1.2) AT1G77810 144 / 2e-39 Galactosyltransferase family protein (.1.2) AT4G26940 140 / 4e-38 Galactosyltransferase family protein (.1.2) AT1G11730 140 / 4e-38 Galactosyltransferase family protein (.1) AT2G32430 139 / 2e-37 Galactosyltransferase family protein (.1) AT1G33430 135 / 5e-36 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G111700 [exp] 381 / 5e-132 AT1G53290 462 / 2e-164 Galactosyltransferase family protein (.1) Potri.001G392700 [exp] 372 / 3e-128 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.018G053150 [exp] 312 / 4e-105 AT2G26100 315 / 2e-106 Galactosyltransferase family protein (.1) Potri.001G450200 [exp] 152 / 3e-42 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.004G013900 [exp] 147 / 2e-40 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 145 / 6e-40 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 144 / 2e-39 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.002G089800 [exp] 143 / 4e-39 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 142 / 9e-39 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014451 [exp] 427 / 1e-149 AT2G26100 437 / 1e-153 Galactosyltransferase family protein (.1) Lus10023955 [exp] 426 / 2e-149 AT2G26100 441 / 3e-155 Galactosyltransferase family protein (.1) Lus10013683 [exp] 355 / 2e-121 AT1G53290 497 / 4e-178 Galactosyltransferase family protein (.1) Lus10017943 [exp] 258 / 2e-84 AT1G53290 328 / 2e-112 Galactosyltransferase family protein (.1) Lus10008282 [exp] 157 / 2e-44 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1) Lus10033248 [exp] 156 / 8e-44 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10006933 [exp] 154 / 3e-43 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10024750 [exp] 154 / 4e-43 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10020042 [exp] 149 / 2e-41 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 148 / 1e-40 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.006G228900.1 pacid=42769856 polypeptide=Potri.006G228900.1.p locus=Potri.006G228900 ID=Potri.006G228900.1.v4.1 annot-version=v4.1 ATGCCCCTCTTTTCTCACCGCCACCCGTCCTCCTCCGCCATCCCCACCACCATCAATCCCAGAACTTCAAAACCATCAAAACCCAATTTTATACCTCCTT CAACCCGCTACCCTCTACCTCTTCTAGTCTTTTCACTCATCTCCCTTCTCATTGGACTTTCTGGCACAATCTTCGCTATCTCAGCGATCCGCAGACCCAA ACCTGTTCCTGTTTTTCGCTGTGGCAGATCCGAGGACACTTTTCGAGCATTTTATTCGGGTTCGGGTAGAACCCGAGGTGATGATAACGGAGCATTGATT GACAGGCCTAAGCTTCTTGGGTTTGTTGGGATTCAAACCGGGTTTGAATCGGGTGATCGCCGGGCTGCACTTAGAAGTACTTGGTTTCCTTCTGACCCAG ATGGACTTTTGAGGTTGGAGCAAGCTACTGGTTTAGCATTTAGGTACGTAATAGGGCGCTCAAAGGATGCAAAGAAAATGGCCCAGCTTGAGAAAGAGGT GGATAAGTACAGAGATTTCATGCTCATAGATGTCGAGGAAGAATATCTAAAGCTTCCATACAAAACGTTGGCCTTTTTCAAGGCAGCCTTTAAGCTTTTT GAAGCAGATTATTATGTCAAAGCTGACGATGATATCTATTTGCGCCCAGATCGCCTTGCAACTCTTCTCGCTAAGGAAAGAACCCACTCACTGACTTATA TTGGATGCATGAAGAAAGGACCAGTGATCACTGATCCTAAAATGAAATGGTATGAGAAATCAGGACATCTGATTGGAAATGAGTACTTCCTGCATGCTTA TGGACCTATATATGTTCTTTCTGCAGAGGTTGTGGCTTCATTAGCATCTGCTAGAAATAACAGTTTGAGAATGTTCAGCAATGAGGATGTCTCTATTGGA TCGTGGATGCTTGCAATGAATGTTTATCATGAAGATAACCGAGCCATATGCGATCCCCGATGCACTCCAACATCTATAGCAGTTTGGGATATTCCTAAAT GTTCTGGTTTATGCAATCCGGCTAGTCGGATGAAGGAGCTTCACAAGATTGATATGTGCTCCAAAAGTCCAACACTGCCCCCTGATGATAGATAG
AA sequence Show only first row Show all	>Potri.006G228900.1 pacid=42769856 polypeptide=Potri.006G228900.1.p locus=Potri.006G228900 ID=Potri.006G228900.1.v4.1 annot-version=v4.1 MPLFSHRHPSSSAIPTTINPRTSKPSKPNFIPPSTRYPLPLLVFSLISLLIGLSGTIFAISAIRRPKPVPVFRCGRSEDTFRAFYSGSGRTRGDDNGALI DRPKLLGFVGIQTGFESGDRRAALRSTWFPSDPDGLLRLEQATGLAFRYVIGRSKDAKKMAQLEKEVDKYRDFMLIDVEEEYLKLPYKTLAFFKAAFKLF EADYYVKADDDIYLRPDRLATLLAKERTHSLTYIGCMKKGPVITDPKMKWYEKSGHLIGNEYFLHAYGPIYVLSAEVVASLASARNNSLRMFSNEDVSIG SWMLAMNVYHEDNRAICDPRCTPTSIAVWDIPKCSGLCNPASRMKELHKIDMCSKSPTLPPDDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26100			Galactosyltransferase family p...		Potri.006G228900 [exp]	0	1
AT1G09420		G6PD4	glucose-6-phosphate dehydrogen...		Potri.005G005866 [exp]	4.89	0.7260
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.002G123500 [exp]	9.16	0.7152
AT3G17900			unknown protein		Potri.008G194566 [exp]	19.44	0.6699
AT3G57620			glyoxal oxidase-related protei...		Potri.013G034900 [exp]	21.16	0.7096
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.003G126800 [exp]	21.90	0.6657	TUB10
					Potri.003G098301 [exp]	23.13	0.6979
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.010G014401 [exp]	24.67	0.6876
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	28.14	0.6917
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Potri.008G158800 [exp]	35.35	0.6358	AGO906,Pt-AGO1.2
AT1G20670			DNA-binding bromodomain-contai...		Potri.019G132601 [exp]	37.94	0.6749

Compare expression of checked genes

Potri.006G228900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.