Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	gdcP1,Pt-GDCP.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33010 1794 / 0 ATGLDP1 glycine decarboxylase P-protein 1 (.1.2) AT2G26080 1783 / 0 ATGLDP2 glycine decarboxylase P-protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G053680 [exp] 299 / 7e-94 AT4G33010 289 / 3e-91 glycine decarboxylase P-protein 1 (.1.2) Potri.018G053640 [exp] 226 / 2e-68 AT4G33010 206 / 5e-62 glycine decarboxylase P-protein 1 (.1.2) Potri.018G053720 [exp] 217 / 6e-66 AT4G33010 175 / 7e-52 glycine decarboxylase P-protein 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024989 [exp] 1802 / 0 AT4G33010 1838 / 0.0 glycine decarboxylase P-protein 1 (.1.2) Lus10026429 [exp] 1351 / 0 AT4G33010 1394 / 0.0 glycine decarboxylase P-protein 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF02347 [poplar] [flax] GDC-P Glycine cleavage system P-protein
Representative CDS sequence Show only first row Show all	>Potri.006G229300.1 pacid=42769919 polypeptide=Potri.006G229300.1.p locus=Potri.006G229300 ID=Potri.006G229300.1.v4.1 annot-version=v4.1 ATGGAACGTGCAAGGAGGCTAGCTAACCGTGCAATCTTGAAAAGGCTGGTTAATGAATCAAAGCAAAGTCACAAGCAGGCGAGAAATGATTCATCTTTGT TAAACTCTTCATCTCCTGTATCATACACACCTTCAAGGTATGTTTCCTCATTGTCATCATTTGGTTCTAGGAGTCCTAGATCAGGTCTATTGCCAGGAAC CAAAAATATTGTATCCCATAATGTTCCTGCTGGTTCTTATGGCATTGGGTCACAGATAAGATCCATTTCTGTTGAATCTTTGAAACCAAGTGACACTTTC CCTCGCCGCCATAACTCAGCCACCCCAGAAGAACAAACCAAAATGGCTGAGTTATGTGGCTTTGATACTCTTGATTCATTGATAGATGCAACTGTGCCTA AATCTATCAGACTTGATTCTATGAAGTTCTCAAAGTTTGATGGAGGGTTAACCGAGAGCCAAATGATTGAACATATGAATTATCTGGCATCAAAGAATAA GGTTTTTAAGTCCTATATTGGGATGGGATATTATAACACTCATGTTCCACCTGTGATTTTGAGGAATATAATGGAGAATCCGGCTTGGTATACCCAGTAC ACACCGTACCAAGCTGAGATATCTCAGGGTAGATTGGAGTCTTTGCTCAATTACCAAACCATGATCACGGATCTTACTGGATTGCCTATGTCAAATGCTT CATTGCTTGATGAAGGGACTGCTGCTGCAGAGGCAATGGCCATGTGTAATAACATTCAAAAGGGAAAGAAAAAGACTTTTATTATTGCTAATAATTGTCA CCCTCAAACTATTGATATTTGTGATACTAGAGCCGGAGGTTTTGATCTTAAGGTAGTTACCGCAGATCTTAAGGACATTGATTATAAATCTGGGGATGTT TGTGGGGTCTTAGTTCAGTATCCCGGGACTGAAGGTGAAGTTTTGGATTATGGAGAGTTTATAAAGAATGCTCATGCTCATGGAGTTAAGGTTGTTATGG CATCGGATTTGTTGGCATTGACGATGTTGAAGCCTCCTGGTGAACTGGGTGCGGATATTGTTGTTGGTTCAGCTCAGAGGTTTGGTGTTCCAATGGGGTA TGGTGGTCCTCATGCTGCGTTTTTGGCAACCTCACAAGAGTACAAGAGGATGATGCCTGGTAGAATTATTGGTGTTAGTGTTGATTCTTCAGGAAAGCCT GCTCTGCGCATGGCGATGCAAACTAGGGAGCAGCATATTCGCAGGGACAAGGCTACCAGCAACATCTGTACTGCTCAAGCATTGCTTGCAAACATGGCTG CTATGTATGCTGTCTATCATGGACCTGAAGGCCTTAAAACCATCGCCCAAAGGGTCCATGGTCTTGCTGGAGCATTCACAGTTGGACTGAAGAAACTTGG GACAGTTGAAGTCCAGGGCCTTCCCTTCTTTGACACTGTGAAGGTTAAGTGTGCTGATGCACATGCAATTGCTGATGCTGCTTACAAAAGCGAGATAAAT TTGAGAGTTGTAGATGCAAAAACCATTACTGTTTCTTTTGATGAAACAACCACCTTAGAGGATGTCGATAAACTTTTCAAAGTTTTTTCTGGTGGAAAGC CTGTCCCTTTCACAGCTGCATCTCTGGCACCAGAGGTTCAGAATGTGATCCCATCTGGTCTAACAAGGGAGAGCCCATATCTGACCCATCCAATCTTTAA CACGTACCATACCGAGCATGAGCTGCTCAGATACATGCATAGGCTGCAATCAAAAGATCTTTCTTTGTGTCACAGTATGATTCCACTGGGGTCTTGTACA ATGAAATTGAATGCTACAAGTGAAATGATGCCAGTGACATTGCCTAATTTCACTGATATGCACCCTTTTGCTCCTACTGAACAGTCTCAAGGTTACCAGG AAATGTTCGATGATTTGGGTGATCTATTGTGTACGATTACTGGGTTTGACTCTTTCTCATTCCAACCAAATGCTGGTGCTGCTGGAGAGTATGCTGGGCT TATGGTTATTCGTGCATATCATAAGGCAAGAGGAGATCATCATCGAAATGTGTGCATCATACCTGTTTCAGCACATGGAACGAATCCTGCGAGTGCTGCC ATGTGTGGAATGAAGATTGTTGCTGTTGGAACTGATGCCAAGGGAAACATCAATGTTGAAGAGCTAAGGAAGGCTGCTGAAGACAATAGGGACAACCTAT CAGCACTTATGGTTACATATCCCTCAACTCACGGGGTCTATGAAGAAGGAATCGATGAGATATGTAAGATAATTCATGACAATGGTGGTCAAGTATACAT GGATGGGGCTAACATGAATGCTCAGGTTGGTCTCACAAGCCCGGGTTTTATTGGAGCTGATGTTTGCCATCTCAATCTCCACAAAACATTTTGCATTCCG CATGGAGGTGGTGGTCCTGGCATGGGTCCTATTGGTGTGCAGAAGCACTTGGCACCATATCTTCCTTCACATCCTGTGGTGCCTACAGGTGGTATTCCAG CCCCTGACCAGTCTCAACCTCTTGGCACCATTTCAGCTGCGCCTTGGGGCTCTGCACTTATCTTGCCAATATCATACACGTACATAGCGATGATGGGTTC GAAGGGGTTAACTGATGCTTCAAAGATAGCTATACTGAATGCAAACTACATGGCAAAGCGATTGGAGAATTACTATCCCATTCTTTTCCGTGGTGTCAAC GGAACAGTTGCCCATGAATTCATTGTGGACTTGAGAGGCGTTAAGAACACCGCTGGAATTGAGCCTGAAGATGTTGCCAAGCGTCTTATGGACTATGGAT TTCATGCACCTACAATGTCATGGCCAGTTCCTGGAACACTTATGATTGAACCCACTGAGAGTGAAAGCAAGGCAGAGTTAGACAGGTTCTGTGATGCGCT TATCTCCATTAGGGAAGAAATTGCAGAGATTGAGAAAGGCAAAGCTGATATCCACAACAATGTCCTCAAGGGAGCTCCTCATCCACCATCTTTGCTTATG GGAGATGCATGGACAAAACCATATTCTCGGGAATATGCAGCCTTCCCTGCTTCTTGGCTTCGTGTTGCCAAGTTCTGGCCTAGTACAGGTCGTGTCGACA ATGTCTATGGTGACCGCAACCTCACCTGCACCCTTCTCTCAGTATCACAGGTTGTTGAAGAACAGGCTGCAGCTACTGCTTAA
AA sequence Show only first row Show all	>Potri.006G229300.1 pacid=42769919 polypeptide=Potri.006G229300.1.p locus=Potri.006G229300 ID=Potri.006G229300.1.v4.1 annot-version=v4.1 MERARRLANRAILKRLVNESKQSHKQARNDSSLLNSSSPVSYTPSRYVSSLSSFGSRSPRSGLLPGTKNIVSHNVPAGSYGIGSQIRSISVESLKPSDTF PRRHNSATPEEQTKMAELCGFDTLDSLIDATVPKSIRLDSMKFSKFDGGLTESQMIEHMNYLASKNKVFKSYIGMGYYNTHVPPVILRNIMENPAWYTQY TPYQAEISQGRLESLLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNNIQKGKKKTFIIANNCHPQTIDICDTRAGGFDLKVVTADLKDIDYKSGDV CGVLVQYPGTEGEVLDYGEFIKNAHAHGVKVVMASDLLALTMLKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKP ALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGAFTVGLKKLGTVEVQGLPFFDTVKVKCADAHAIADAAYKSEIN LRVVDAKTITVSFDETTTLEDVDKLFKVFSGGKPVPFTAASLAPEVQNVIPSGLTRESPYLTHPIFNTYHTEHELLRYMHRLQSKDLSLCHSMIPLGSCT MKLNATSEMMPVTLPNFTDMHPFAPTEQSQGYQEMFDDLGDLLCTITGFDSFSFQPNAGAAGEYAGLMVIRAYHKARGDHHRNVCIIPVSAHGTNPASAA MCGMKIVAVGTDAKGNINVEELRKAAEDNRDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPGFIGADVCHLNLHKTFCIP HGGGGPGMGPIGVQKHLAPYLPSHPVVPTGGIPAPDQSQPLGTISAAPWGSALILPISYTYIAMMGSKGLTDASKIAILNANYMAKRLENYYPILFRGVN GTVAHEFIVDLRGVKNTAGIEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAEIEKGKADIHNNVLKGAPHPPSLLM GDAWTKPYSREYAAFPASWLRVAKFWPSTGRVDNVYGDRNLTCTLLSVSQVVEEQAAATA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33010		ATGLDP1	glycine decarboxylase P-protei...		Potri.006G229300 [exp]	0	1	gdcP1,Pt-GDCP.2
AT3G24420			alpha/beta-Hydrolases superfam...		Potri.006G155500 [exp]	3.74	0.9301
AT5G19850			alpha/beta-Hydrolases superfam...		Potri.003G219700 [exp]	4.89	0.9393
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052500 [exp]	9.32	0.9287
AT5G02540			NAD(P)-binding Rossmann-fold s...		Potri.006G083900 [exp]	11.83	0.9200
AT2G45290			Transketolase (.1)		Potri.014G068200 [exp]	13.85	0.8403
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.014G043500 [exp]	14.96	0.9168
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Potri.006G062300 [exp]	14.96	0.9110
AT3G57520		RS2, ATSIP2	raffinose synthase 2, seed imb...		Potri.016G002300 [exp]	19.59	0.9236
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.019G023012 [exp]	23.02	0.9127
AT4G36530			alpha/beta-Hydrolases superfam...		Potri.005G121000 [exp]	26.83	0.9144

Compare expression of checked genes

Potri.006G229300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.