Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11840 302 / 9e-104 Protein of unknown function (DUF1230) (.1) AT5G67370 152 / 2e-44 Protein of unknown function (DUF1230) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052500 [exp] 152 / 3e-44 AT5G67370 391 / 3e-137 Protein of unknown function (DUF1230) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039247 [exp] 341 / 5e-119 AT5G11840 287 / 1e-97 Protein of unknown function (DUF1230) (.1) Lus10027492 [exp] 181 / 6e-58 AT5G11840 155 / 3e-48 Protein of unknown function (DUF1230) (.1) Lus10011087 [exp] 151 / 4e-44 AT5G67370 388 / 6e-136 Protein of unknown function (DUF1230) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06799 [poplar] [flax] DUF1230 Conserved in the green lineage and diatoms 27
Representative CDS sequence Show only first row Show all	>Potri.006G229600.1 pacid=42768053 polypeptide=Potri.006G229600.1.p locus=Potri.006G229600 ID=Potri.006G229600.1.v4.1 annot-version=v4.1 ATGGCGATTCCACTCCTCCACCTATCATCACCGTTCCTCCTCTCCTCTCTAACACAGAAAAGATTTATCTACCATCACCACCACAATTACAAAAACACAC TTCCAAAAATACCCTCGTCTTCCTTCAGAAATGGAAGCAGCAACACTCCTCCAGAAACAGAGTGCCCTGTTCCACTCGATCAACAACCCATAAATGAATA CCAAAATCTCTCCACTTCCTTCCCTTTCTCTTGGGCTTCAGGTGACATTGTTGAGTACTGCTCTCGTTTGTTCGTTACTGGCGCTTCTTTTGCTCTCCTT ATCGCCCTACCTGTTGCTTGGTTTGGCACCGTGGCCCCAAAAACTGAGCCATTGAAGCCAGTTCTTGCAGCTTTATCAAGTGGGGTTTTTGTTGTTAGTC TTGCTGTTGTCAGAATGTATCTGGGTTGGGCTTATGTTGGGAATCGACTGCTCAGTGCCACTGTTGAATATGAAGAGACAGGGTGGTATGATGGTCAGAT ATGGGTGAAGACAGCTGAAGTTTTGGCTCGAGATCGGCTTCTTGGTTCATTTTCAGTCAAGCCTGTGCTAAGCAGATTGAAGTACACTCTGGTCACTCTA GCAGCATCATTATTTGTATGCGTTGTTCTCTTCATCAATATTGAGGGAGGCCAAAAGGGTTCTTACACACCATTTGAAGAAGCTGGGGGTAGAGCTATTC CTGGAGTTTACAATGATGATTCAGCCAGATCTTTCGAGCCAGATGCATTCTGTGGTGAACCTGCTCCTCCTGAATCATGA
AA sequence Show only first row Show all	>Potri.006G229600.1 pacid=42768053 polypeptide=Potri.006G229600.1.p locus=Potri.006G229600 ID=Potri.006G229600.1.v4.1 annot-version=v4.1 MAIPLLHLSSPFLLSSLTQKRFIYHHHHNYKNTLPKIPSSSFRNGSSNTPPETECPVPLDQQPINEYQNLSTSFPFSWASGDIVEYCSRLFVTGASFALL IALPVAWFGTVAPKTEPLKPVLAALSSGVFVVSLAVVRMYLGWAYVGNRLLSATVEYEETGWYDGQIWVKTAEVLARDRLLGSFSVKPVLSRLKYTLVTL AASLFVCVVLFINIEGGQKGSYTPFEEAGGRAIPGVYNDDSARSFEPDAFCGEPAPPES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11840			Protein of unknown function (D...		Potri.006G229600 [exp]	0	1
AT2G22780		PMDH1	peroxisomal NAD-malate dehydro...		Potri.001G287400 [exp]	5.56	0.9596	MDHG.2
AT4G13200			unknown protein		Potri.002G241000 [exp]	5.74	0.9542
AT3G61550			RING/U-box superfamily protein...		Potri.002G165200 [exp]	8.24	0.9495
AT5G11480			P-loop containing nucleoside t...		Potri.006G243200 [exp]	10.48	0.9592
AT5G09995			unknown protein		Potri.010G003700 [exp]	11.87	0.9587
AT3G15840		PIFI	post-illumination chlorophyll ...		Potri.001G204300 [exp]	16.61	0.9552
AT1G14150		PnsL2, PQL2, PQ...	PsbQ-like 1, Photosynthetic ND...		Potri.010G166800 [exp]	18.43	0.9559
AT2G31040			ATP synthase protein I -relate...		Potri.014G142200 [exp]	19.23	0.9554
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Potri.010G117200 [exp]	22.80	0.9549	APG2.1
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.006G202000 [exp]	23.62	0.9546

Compare expression of checked genes

Potri.006G229600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.