Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26070 359 / 6e-127 RTE1 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) AT3G51040 228 / 3e-75 RTH RTE1-homolog (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G053900 [exp] 466 / 3e-169 AT2G26070 330 / 4e-115 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Potri.007G017900 [exp] 221 / 2e-72 AT3G51040 280 / 5e-96 RTE1-homolog (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030001 [exp] 317 / 5e-110 AT2G26070 276 / 5e-94 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1) Lus10028350 [exp] 209 / 8e-68 AT3G51040 294 / 1e-101 RTE1-homolog (.1.2.3) Lus10041800 [exp] 207 / 4e-67 AT3G51040 294 / 1e-101 RTE1-homolog (.1.2.3) Lus10035322 [exp] 187 / 4e-57 AT2G26070 176 / 3e-52 REVERSION-TO-ETHYLENE SENSITIVITY1, Protein of unknown function (DUF778) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05608 [poplar] [flax] DUF778 Protein of unknown function (DUF778)
Representative CDS sequence Show only first row Show all	>Potri.006G229900.2 pacid=42767536 polypeptide=Potri.006G229900.2.p locus=Potri.006G229900 ID=Potri.006G229900.2.v4.1 annot-version=v4.1 ATGCCACGTGGACGATTTTCTCCAATGGATTTAAAAGGAGCTTTTGATGTTGAGCATATGAGTTCCACATCAAGAATTCAGCATGACCTGTGGCCTCTTG ATGGAATTGATCCAAAGAAAGCTAAGTTTCCATGTTGTCTCATCTGGACTCCACTCCCAGTTGTCTCATGGTTGGCACCTTTTATCGGACATGTTGGCAT TTGCAGGGAGGATGGAACTATTTTAGATTTTTCAGGATCCAATTCTGTGAATGTTGATGATTTTACATTTGGTGCAGCTGCTAGGTATCTTCAACTTGAT AGAGAACAGTGTTGCTTTCCGCCAAACCTAGCTGGGCACACATGCAAGCACGGCTACAAGCACTCAGAGTATGGGACTGCGATCACGTGGGATGATGCTC TGCAGTCAAGCACGCGTAGCTTTGAGCACAAAACATACAACCTTTTCACATGCAACTGTCATTCATTTGTTGCCCACTGCCTGAATCGATTCTGTTATGG TGGATCGATGGATTGGAACTTGATAGATGTGGCAGTTCTAATACTCTTCAAGGGGCATTGGATAGACTGGAAGTCAATAATCAAATCGTTCCTTCCTTTC ACAATTGTGCTTTGCTTAGGTATAGTTTTGGTTGGCTGGCCTTTCTTAGTTGGGCTGTTCTCATTCACTCTCCTCCTTATGGGGTGGTTTCTGTTGGGCA CTTACTGTTTCAAAAGCCTATTAGAATGCTAG
AA sequence Show only first row Show all	>Potri.006G229900.2 pacid=42767536 polypeptide=Potri.006G229900.2.p locus=Potri.006G229900 ID=Potri.006G229900.2.v4.1 annot-version=v4.1 MPRGRFSPMDLKGAFDVEHMSSTSRIQHDLWPLDGIDPKKAKFPCCLIWTPLPVVSWLAPFIGHVGICREDGTILDFSGSNSVNVDDFTFGAAARYLQLD REQCCFPPNLAGHTCKHGYKHSEYGTAITWDDALQSSTRSFEHKTYNLFTCNCHSFVAHCLNRFCYGGSMDWNLIDVAVLILFKGHWIDWKSIIKSFLPF TIVLCLGIVLVGWPFLVGLFSFTLLLMGWFLLGTYCFKSLLEC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Potri.006G229900 [exp]	0	1
					Potri.001G016032 [exp]	3.74	0.7103
AT1G73010		AtPPsPase1, ATP...	pyrophosphate-specific phospha...		Potri.008G196800 [exp]	9.48	0.7383
AT1G53540			HSP20-like chaperones superfam...		Potri.010G175200 [exp]	11.22	0.7506	Pt-HSP17.8
AT4G33070			Thiamine pyrophosphate depende...		Potri.016G120100 [exp]	13.00	0.6827	Pt-PDC1.5
AT3G59900		ARGOS	auxin-regulated gene involved ...		Potri.007G146401 [exp]	17.66	0.6658
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.001G015966 [exp]	23.45	0.6672
AT5G49300	GATA	GATA16	GATA transcription factor 16 (...		Potri.002G199800 [exp]	23.87	0.6541
AT5G54165			unknown protein		Potri.012G021602 [exp]	30.72	0.7026
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Potri.008G073600 [exp]	30.98	0.7265	DREB8,Pt-DREB2.4
AT2G01300			unknown protein		Potri.004G093000 [exp]	32.52	0.6398

Compare expression of checked genes

Potri.006G229900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.