Plant FIBer expression Database

Potri.006G230000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11810 333 / 9e-115 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10022300
[exp]
424 / 3e-150 AT5G11810 322 / 2e-110 unknown protein
Lus10003649
[exp]
403 / 5e-142 AT5G11810 301 / 5e-102 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G230000.1 pacid=42767897 polypeptide=Potri.006G230000.1.p locus=Potri.006G230000 ID=Potri.006G230000.1.v4.1 annot-version=v4.1
ATGGCAGACAAGGCAAGCAGAGGCTTAGTGATATACGGAGATGGACTGGCTTCTTTCATCAATCCTTCCCATGCTCATCTCCACTCTCTTGCTTCCAAAG
CTTTCTGCGGTTTCTTAACCCTCCCCAATGCTCCTCCCTCAGAAAGTGAGGATGAGAGGATAGTTAGAGAGTTTGCGTATCTGTTAGATGCATGTGAAGC
TTATCAGAATGTGAGTTCTCAGAGTACCTCAATTCCAACCATATCAGAGAGGTTCATGGGAATGAAGGCTGCTATAATAACTAACAATCCTGGCTTGAAA
GCTTTTGGTGGCAAACTCGGTTTGACTGTGTTTCCATTCAACGATTTAAAGGGGAATGAATTTTCCCTTTCTGGATCATCTACTGATTTTGTGACATTTG
AGTTACTCAAGTTGCTTGGATTTCAAGAGGGGAAGACACTAGAGACAAGTCAATTTGATTTAGTATTTGTGCATGTTGGAGCTGGTGAAAGAGTGAATGC
TGAGGGACACAAGACTATTGCCATTGATGTGGAATATATTGATGCTTTAGTTGATGGCATCATGCGCATAGCACAACCTGGCTCTGAAATTGGTTCTCGT
CTGCACTTGTCCCTTGTAATGAGCTATGGTTATGTTACAGAAGGTGATGGTAGAGATTTATCAATTTTGACTTCTAAAGATGAGATGGATCCTGCTCTTT
CAAAGCTCTTCCCTCTTCAAAGTTATACTATGAAAGGAGAAAAACCACGAAATGATATCAGGTACCATTGCCCAATGTTAATTTCTCAATGGCAGTATGC
TGTAACCCGTGTGGATATGGCAGAAACATTTTCTTTTAAAGATTTTAAAGAGCATGGTGGAAATCTTGTAATACCAGCTGATAGATTCCTGCACGAGGTA
GCATTTAAGCTTTGGAAGGCCCCCAAGTATGGAGCATAA
AA sequence
>Potri.006G230000.1 pacid=42767897 polypeptide=Potri.006G230000.1.p locus=Potri.006G230000 ID=Potri.006G230000.1.v4.1 annot-version=v4.1
MADKASRGLVIYGDGLASFINPSHAHLHSLASKAFCGFLTLPNAPPSESEDERIVREFAYLLDACEAYQNVSSQSTSIPTISERFMGMKAAIITNNPGLK
AFGGKLGLTVFPFNDLKGNEFSLSGSSTDFVTFELLKLLGFQEGKTLETSQFDLVFVHVGAGERVNAEGHKTIAIDVEYIDALVDGIMRIAQPGSEIGSR
LHLSLVMSYGYVTEGDGRDLSILTSKDEMDPALSKLFPLQSYTMKGEKPRNDIRYHCPMLISQWQYAVTRVDMAETFSFKDFKEHGGNLVIPADRFLHEV
AFKLWKAPKYGA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G11810 unknown protein Potri.006G230000
[exp]
0 1
AT2G32060 Ribosomal protein L7Ae/L30e/S1... Potri.001G046600
[exp]
7.74 0.7295
AT5G59240 Ribosomal protein S8e family p... Potri.001G360500
[exp]
10.09 0.6970
AT5G10360 RPS6B, EMB3010 Ribosomal protein small subuni... Potri.005G162600
[exp]
14.21 0.7147
AT5G60390 GTP binding Elongation factor ... Potri.010G218600
[exp]
14.28 0.7116
AT4G29170 ATMND1 Mnd1 family protein (.1.2) Potri.018G069800
[exp]
18.11 0.6957
AT2G20490 NOP10, EDA27 EMBRYO SAC DEVELOPMENT ARREST ... Potri.005G226300
[exp]
18.86 0.7107
AT5G60390 GTP binding Elongation factor ... Potri.010G218800
[exp]
18.97 0.6995
AT4G22150 PUX3 plant UBX domain-containing pr... Potri.004G004200
[exp]
20.49 0.6957
AT3G46940 DUT1 DUTP-PYROPHOSPHATASE-LIKE 1 (.... Potri.002G261900
[exp]
25.45 0.6910
AT1G14150 PnsL2, PQL2, PQ... PsbQ-like 1, Photosynthetic ND... Potri.008G088750
[exp]
27.60 0.5344

Potri.006G230000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.