Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATKEA4.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11800 729 / 0 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) AT2G19600 728 / 0 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) AT5G51710 603 / 0 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) AT4G00630 107 / 5e-24 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT1G01790 102 / 3e-22 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G04850 90 / 2e-18 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G054100 [exp] 872 / 0 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.012G130500 [exp] 618 / 0 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.015G132400 [exp] 610 / 0 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.014G080800 [exp] 107 / 8e-24 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.002G157200 [exp] 102 / 2e-22 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.009G080800 [exp] 90 / 2e-18 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040549 [exp] 722 / 0 AT2G19600 851 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10008002 [exp] 668 / 0 AT2G19600 781 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10031106 [exp] 607 / 0 AT5G51710 907 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10031687 [exp] 566 / 0 AT5G51710 833 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10007999 [exp] 514 / 5e-180 AT2G19600 569 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10008000 [exp] 131 / 5e-35 AT5G51710 149 / 3e-42 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Lus10020485 [exp] 85 / 5e-17 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10007104 [exp] 84 / 8e-17 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10018844 [exp] 80 / 3e-15 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10017823 [exp] 64 / 3e-10 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.006G230400.1 pacid=42767637 polypeptide=Potri.006G230400.1.p locus=Potri.006G230400 ID=Potri.006G230400.1.v4.1 annot-version=v4.1 ATGTTGAGAAGAGAACCATTTCTTTGCAAACTCATTTTTTTCCTCTTCTGTTTCGCTTCCCTCTCACTCGCTGACGAACTCACCGACTCAGATCGGCTCG AGTTCACCGCCAACGCTTCAATCTCTAACACTTCTCTACCTAAACCTAATGAAGGCGGTAGTTTTGCTGATATGATCGATAAAGCTCTCGAGAAAGAGTT CACTGAGAATGACCAAAACGAAGCAACTGATGCCGGAAGCTTCAACAACAGCGTAGCTGAACAGCAGGCAGTTTTGGAAACTGTTGCCAGAGTTAAATCG AAGAAAAATGACACGAAAGAGGAAAAGTCGTTTAAATTTCATGATGTTTTTAATTTGGACAATGAGAATGGACCAGAAGATACCCCAACACTGATAGATC GAAAGGATAATGTCTTCATTATATCAAACTTTAAATCAAAATATCCGGTGCTGCAGCTAGACTTGCGATTGATATCAGATTTGGTTGTCGTCATTGTATC TGCAACTTGTGGTGGCATTGCATTTGCTTGTGCTGGACAACCGGTCATCACTGGATACTTGCTAGCAGGATCCATTATTGGTCCTGGAGGGTTTAACTTT GTCAGTGAAATGGTTCAAGTTGAGACGGTGGCTCAGTTTGGTGTTATTTTTCTTCTTTTTGCCTTGGGCTTGGAGTTTTCAACAACAAAGCTTCGAGTTG TCCGGGCAGTTGCTGTTGTAGGAGGTCTGCTTGAAATTGTTTTATTCATGTTCTTATGTGGCATTACAGCCATGTTATGCGGTGGTAAGTCTTCAGAGGG TGTGTTTGTTGGTGCATTCCTTTCAATGTCTTCAACAGCAGTGGTATTGAAGTTCTTGATGGAAAAGAATTCTATTAATTCCCTTCATGGGCAAGTCACC ATTGGAACTCTAATTTTGCAGGACTGTGCAGTTGGTTTGCTGTTTGCACTGCTTCCTGTTCTATGTGGAACTTCTGGTGTTCTTCAAGGACTAATGTCCA TGACTAAAGTGTTGGTGTTGTTGATTGCATTTTTGGCTGTTCTGTCAATATTATCTCGTACTTGGGTTCCATGGTTTCTTAAATTGATGATGAGCCTATC ATCACAGACCAATGAACTCTATCAATTAGCATCCGTCGCTTTCTGCTTGCTTGTAGCCTGGAGTAGTGATAAGCTTGGCTTAAGTCTAGAACTGGGTTCA TTTGCTGCTGGGGTGATGATATCAACAACTGATCTTGCTCAGCATACACTAGAACAAATTGAACCCATTCGGAATTTCTTTGCTGCTCTTTTCCTTGCCA GCATTGGGATGCTGATCCATGTCCATTTTCTCTGGAGCCATGTTGATATATTACTGGCGTCCGTTATATTGGTTATCATAATAAAGACAGCCATAATCAC GACAGTTGTAAGGGGATTTGGTTACAACAACAAGACCGCACTTCTTGTTGGAATGTCTCTGGCACAAATAGGGGAGTTTGCTTTTGTTCTTCTTAGCCGT GCTTCTAATCTTCATCTAGTTGAGGGGAAACTTTACCTGCTGCTTCTTGGGACAACAGCTCTTAGCTTGGTGACAACGACTCTGCTTTTCAAGCTAATCC CTGCTGTAATGCATCTTGGAGTGCTGTTACGGTGGTTCCCTCCTGACAGCGCAGTCGAGGTTGGATCTAAAGGAGATAACTTCCGATCTGACAGTGATGA AGTTGACTGTGTTCCTCTAGGACTGGCACGAAGTTTTGCGTTCGATTTAGATAGGAAATTTTCTTTGCCATGA
AA sequence Show only first row Show all	>Potri.006G230400.1 pacid=42767637 polypeptide=Potri.006G230400.1.p locus=Potri.006G230400 ID=Potri.006G230400.1.v4.1 annot-version=v4.1 MLRREPFLCKLIFFLFCFASLSLADELTDSDRLEFTANASISNTSLPKPNEGGSFADMIDKALEKEFTENDQNEATDAGSFNNSVAEQQAVLETVARVKS KKNDTKEEKSFKFHDVFNLDNENGPEDTPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVVVIVSATCGGIAFACAGQPVITGYLLAGSIIGPGGFNF VSEMVQVETVAQFGVIFLLFALGLEFSTTKLRVVRAVAVVGGLLEIVLFMFLCGITAMLCGGKSSEGVFVGAFLSMSSTAVVLKFLMEKNSINSLHGQVT IGTLILQDCAVGLLFALLPVLCGTSGVLQGLMSMTKVLVLLIAFLAVLSILSRTWVPWFLKLMMSLSSQTNELYQLASVAFCLLVAWSSDKLGLSLELGS FAAGVMISTTDLAQHTLEQIEPIRNFFAALFLASIGMLIHVHFLWSHVDILLASVILVIIIKTAIITTVVRGFGYNNKTALLVGMSLAQIGEFAFVLLSR ASNLHLVEGKLYLLLLGTTALSLVTTTLLFKLIPAVMHLGVLLRWFPPDSAVEVGSKGDNFRSDSDEVDCVPLGLARSFAFDLDRKFSLP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.006G230400 [exp]	0	1	Pt-ATKEA4.3
AT3G24530			AAA-type ATPase family protein...		Potri.018G081000 [exp]	3.87	0.9196
AT5G04420			Galactose oxidase/kelch repeat...		Potri.010G230300 [exp]	5.47	0.9210
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.003G015300 [exp]	5.83	0.9346
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Potri.001G322500 [exp]	6.32	0.9136	Pt-DET3.1
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006000 [exp]	6.78	0.9277
AT4G17910			transferases, transferring acy...		Potri.003G093300 [exp]	9.05	0.8908
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Potri.012G114600 [exp]	9.38	0.9136
AT1G63430			Leucine-rich repeat protein ki...		Potri.003G124800 [exp]	14.96	0.9174
AT5G51540			Zincin-like metalloproteases f...		Potri.015G129300 [exp]	15.00	0.9159
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	16.61	0.9181

Compare expression of checked genes

Potri.006G230400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.