Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32980 315 / 4e-101 HD ATH1 homeobox gene 1 (.1) AT2G27220 161 / 2e-43 HD BLH5 BEL1-like homeodomain 5 (.1.2) AT1G19700 162 / 6e-43 HD BEL10, BLH10 BEL1-like homeodomain 10 (.1.2.3) AT4G34610 161 / 6e-43 HD BLH6 BEL1-like homeodomain 6 (.1.2) AT2G35940 162 / 3e-42 HD BLH1, EDA29 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) AT1G75410 159 / 4e-42 HD BLH3 BEL1-like homeodomain 3 (.1.2) AT2G16400 156 / 2e-41 HD BLH7 BEL1-like homeodomain 7 (.1) AT4G36870 147 / 4e-37 HD BLH2, SAW1 SAWTOOTH 1, BEL1-like homeodomain 2 (.1.2) AT5G41410 145 / 9e-37 HD BEL1 BELL 1, POX (plant homeobox) family protein (.1) AT1G75430 137 / 3e-36 HD BLH11 BEL1-like homeodomain 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G054700 [exp] 837 / 0 AT4G32980 327 / 1e-105 homeobox gene 1 (.1) Potri.001G216600 [exp] 189 / 1e-51 AT2G35940 377 / 7e-121 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.016G069700 [exp] 183 / 8e-50 AT2G35940 501 / 1e-169 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.009G017400 [exp] 183 / 1e-49 AT2G35940 310 / 4e-95 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.006G203000 [exp] 181 / 7e-49 AT2G35940 491 / 9e-166 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Potri.001G100800 [exp] 169 / 6e-45 AT5G41410 440 / 4e-147 BELL 1, POX (plant homeobox) family protein (.1) Potri.004G159300 [exp] 166 / 9e-44 AT4G34610 416 / 2e-138 BEL1-like homeodomain 6 (.1.2) Potri.009G120800 [exp] 160 / 8e-42 AT4G34610 418 / 2e-139 BEL1-like homeodomain 6 (.1.2) Potri.002G031000 [exp] 160 / 8e-42 AT2G16400 345 / 8e-112 BEL1-like homeodomain 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026432 [exp] 328 / 2e-106 AT4G32980 304 / 7e-99 homeobox gene 1 (.1) Lus10029405 [exp] 186 / 1e-50 AT2G35940 478 / 9e-161 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10004201 [exp] 185 / 2e-50 AT2G35940 504 / 1e-170 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10013579 [exp] 176 / 9e-48 AT2G35940 427 / 1e-142 embryo sac development arrest 29, BEL1-like homeodomain 1 (.1.2.3) Lus10000184 [exp] 162 / 2e-42 AT4G34610 447 / 7e-151 BEL1-like homeodomain 6 (.1.2) Lus10017481 [exp] 160 / 9e-42 AT4G34610 424 / 1e-141 BEL1-like homeodomain 6 (.1.2) Lus10028802 [exp] 160 / 2e-41 AT4G34610 447 / 1e-150 BEL1-like homeodomain 6 (.1.2) Lus10010633 [exp] 156 / 1e-40 AT1G75410 340 / 3e-110 BEL1-like homeodomain 3 (.1.2) Lus10021498 [exp] 151 / 7e-39 AT5G02030 339 / 6e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1) Lus10022599 [exp] 150 / 2e-38 AT5G02030 339 / 7e-109 VAAMANA, REPLUMLESS, PENNYWISE, LARSON, BELLRINGER, BEL1-LIKE HOMEODOMAIN 9, POX (plant homeobox) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05920 [poplar] [flax] Homeobox_KN Homeobox KN domain CL0123 [poplar] [flax] PF07526 [poplar] [flax] POX Associated with HOX
Representative CDS sequence Show only first row Show all	>Potri.006G230700.3 pacid=42769425 polypeptide=Potri.006G230700.3.p locus=Potri.006G230700 ID=Potri.006G230700.3.v4.1 annot-version=v4.1 ATGCACAATATCATGGAGAATGGTTTGTTTGGTGTTCCAATAGATATGGCAGGAAGGAATTCTGTTGCTACAGATCGATCATCACAGAGAACCCCAAACT CACTTGTCCAGTTTGATTCATTCAACCTTAACAACCATAGTCAGACAGTGGTTGGATTTACCATGCTTCCGACATTGCAAGGAGAACCTATCAATGATCT CCATGCAAGCATTCACTTGGCCAATCGATCTTCAGTTATGAACTCAGAGGCATTAGTTACATCTCTTGGAAGGAATGTAGTGGGAGATGCTTTACCTGGC TGTTCACGTTCTATTAGTAACACTCCGTTTGATGAGCAATTTGGGGGTGGAACAACAATTTCTAGTTCTTCACTTGCTACTCTTTTAGCCACAAGAAGTG GTCTTCAAGAAAATCCGAACGACTTGGCAATTTCAGGACCGTCAAGCTACCCTTTAGACGAGTTCAGGTCTTTTGTTTCAAATGACTGCACCAATGCTTT GAGCTCTTCATTTGCGTCGTCTTTGAATTATGGATGTGGTGAAGTATTTGGTAACATGAATAGTAAGGAGGATTTTGACAGGTTTCCTGCTCCTTTAGAG CTTGGTGGACGAACATCTGTAAGAGCAGGATTTCAACCATATTCGTCCATTGGAAGCCTGCAGCTGAATAGCTGGGTAGAGCCAAATGGTGTGAATGTGA GTGCAGGTGACCCTTTTGCATCTGGTAAACCTACTAACGAGCTCTCTTTGAGTCTTTCCACATCCCAGCCTTCTGTCATAGATAGAAGTATCCCAGATCA ATGCTTGGAGATAAGTTGTAATCATTTAACACGCCATTGTTTGAAAGAAACAAGGTCATGCTCTGAACAAACTTCTTCTAGTAGTAAGGAGCTTTCTTTG AGTTGCCATTCTTATAACGCTGGTCAATTCTCACAAGTATTAGTAGGATCCAGATATCTTCATGTAATACAGGAAATACTTGCTAAAATTGCAAGCTATT CACTAGAGAATGTGGACCAGATAAGCTCTTCTACTGTTTGGTTCAAGACTGGAGCAAGTACACCATTCTCTTCAAGTTACCCTACTGAAGGAGGTATGTT GTCGATGGGTTCTGATGAATCTCCTGGTGTGAATGGTAGATTTGAAGTTCAAATGGATCCAGCACTTCAGAAACGGGCACTAGAAGCAAAGAGAACACAA TTGCTAACCCTACTACAAGTGGTTGATGAACGATATAGCCAATGCTTGGATGAAATACACACAGTTATATCAGCGTTCCATGCTGCAACTGAGTTGGACC CACAGATTCACACTCGTTTTGCTCTCCAAACAATCTCTTTCTTGTGCAAACGCCTTAGGGATAGGATTAGCAACCAAATCCTAGCAATGGGAGCTCAGTT AGATAGTGGAGACACCATAGAGATAGAAGGATCTTTTGAAAGTTCGTACTTACAGAAGCAATGGACTCTACAGCAGCTGAAGAAAAAAGATCATCCGCTG TGGAGACCCCAGAGAGGATTGCCAGAACGATCTGTCTCAGTTCTGCGTGCATGGATGTTCCAGAACTTTCTTCACCCGTACCCTAAAGATGCAGAAAAGC ATTTGCTAGCAGTAAAAAGTGGACTCACAAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGTCTATGGAAACCGCTGATAGAGGAAATGTA TGCTGAGATGAACAGAAGAAAGGCGCACCAAATCGAGGAGGGAACCTACAGCAATCACAGAGGCCAGATTAGCATCAGCAATCCAAGATTTAATGTGAAT TAG
AA sequence Show only first row Show all	>Potri.006G230700.3 pacid=42769425 polypeptide=Potri.006G230700.3.p locus=Potri.006G230700 ID=Potri.006G230700.3.v4.1 annot-version=v4.1 MHNIMENGLFGVPIDMAGRNSVATDRSSQRTPNSLVQFDSFNLNNHSQTVVGFTMLPTLQGEPINDLHASIHLANRSSVMNSEALVTSLGRNVVGDALPG CSRSISNTPFDEQFGGGTTISSSSLATLLATRSGLQENPNDLAISGPSSYPLDEFRSFVSNDCTNALSSSFASSLNYGCGEVFGNMNSKEDFDRFPAPLE LGGRTSVRAGFQPYSSIGSLQLNSWVEPNGVNVSAGDPFASGKPTNELSLSLSTSQPSVIDRSIPDQCLEISCNHLTRHCLKETRSCSEQTSSSSKELSL SCHSYNAGQFSQVLVGSRYLHVIQEILAKIASYSLENVDQISSSTVWFKTGASTPFSSSYPTEGGMLSMGSDESPGVNGRFEVQMDPALQKRALEAKRTQ LLTLLQVVDERYSQCLDEIHTVISAFHAATELDPQIHTRFALQTISFLCKRLRDRISNQILAMGAQLDSGDTIEIEGSFESSYLQKQWTLQQLKKKDHPL WRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNRRKAHQIEEGTYSNHRGQISISNPRFNVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Potri.006G230700 [exp]	0	1
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G012800 [exp]	1.00	0.9156
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Potri.010G051100 [exp]	3.31	0.8773
AT1G21740			Protein of unknown function (D...		Potri.004G177200 [exp]	4.00	0.9038
AT2G23440			unknown protein		Potri.007G041400 [exp]	4.24	0.8950
AT2G46410	MYB	CPC	CAPRICE, Homeodomain-like supe...		Potri.004G015100 [exp]	5.29	0.9146
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Potri.014G102700 [exp]	10.67	0.8673	Pt-CYP78.2
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Potri.010G173300 [exp]	11.31	0.8689	ZIP1.1
AT5G62170			unknown protein		Potri.015G135200 [exp]	11.40	0.8244
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.015G031600 [exp]	11.74	0.9040
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.012G042100 [exp]	14.86	0.8721

Compare expression of checked genes

Potri.006G230700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.