Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56750 524 / 0 NDL1 N-MYC downregulated-like 1 (.1) AT5G11790 518 / 0 NDL2 N-MYC downregulated-like 2 (.1) AT2G19620 493 / 3e-176 NDL3 N-MYC downregulated-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G054900 [exp] 625 / 0 AT5G11790 516 / 0.0 N-MYC downregulated-like 2 (.1) Potri.018G067700 [exp] 546 / 0 AT5G56750 552 / 0.0 N-MYC downregulated-like 1 (.1) Potri.013G038100 [exp] 457 / 4e-162 AT5G56750 462 / 6e-164 N-MYC downregulated-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026433 [exp] 474 / 3e-169 AT5G56750 456 / 2e-162 N-MYC downregulated-like 1 (.1) Lus10001786 [exp] 446 / 2e-157 AT5G56750 465 / 4e-165 N-MYC downregulated-like 1 (.1) Lus10020241 [exp] 410 / 1e-143 AT5G56750 431 / 1e-151 N-MYC downregulated-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03096 [poplar] [flax] Ndr Ndr family
Representative CDS sequence Show only first row Show all	>Potri.006G230800.1 pacid=42768482 polypeptide=Potri.006G230800.1.p locus=Potri.006G230800 ID=Potri.006G230800.1.v4.1 annot-version=v4.1 ATGGGAGATTCAAGTGACTCAGTCTCCATTGATATGGAGACTCCTTCTCTTAGTGGAAAGGAGTATGTTGTTGAAACTTGCTGTGGTTATGTGTCGGTTT CTGTATATGGAGACCAAGACAAGCCCGCTCTTGTTACTTATCCTGATTTAGCTCTAAATCATATTTCTTGTTTTCAAGGATTGTTCTTTTGTCCTGAAGC ATGCTCGTTGCTCCTTCACAACTTTTGCATATATCACATCAGTCCTCCTGGGCATGAGTTGGGAGCTGCCACAATTAGTCCTGATGACCCTTTGCTTTCT GTTGATGACTTGGCAGACCAAATTGCTGATGTTCTCAATTATTTTGGACTTGATGCAGTGATGTGTATGGGGGTTACTGCTGGAGCTTACATTCTTACCT TATTTGCTATGAAATATAGACAACGTGTTCTTGGCTTGATACTTATTTCCCCTCTATGCAATGCACCCTCTTGGACAGAATGGCTGTATAACAAGGTCTT GTCTAATTTACTATACTATTATGGCATGTGTGGTGTGGTGAAGGAATTATTACTTAAGCGGTATTTCAGCAAGCAGGAAGCTCGTGGTAGTGCTCAAGTA CCAGAATCAGATGTAGTCCAGGCCTGCAGAAGATTGCTGGATGAGAGGCAGGGTTTAAATGTGTGGCGATTTCTTGAAGCAATGAATGGGAGACAAGACA TTAGTGATGGATTGAGAAAACTACGGTGTCGCTCACTAATATATGTTGGTGAGAGCTCTCCGTTTCACTTTGAGGCTCTTGACATGAACTCAAAACTTGA CAGAAGATGTAGTGCCTTAGTTGAGGTTCAGGCATGTGGGTCAATGGTGACAGAGGAGCAGCCCCATGCCATGTTAATACCACTGGAATACTTTCTCATG GGATACGGTATGTACAGGCCACCTAAGTTGAGTGTTAGTCCAAGAAGTCCTCTGAGTCCAATTTGCATCTCGCCAGAGCTTCTATCGCCGGAAAGCATGG GTTTGAAGTTAAAACCAATAAAAACACGCATATCTCTAGAAGTTTAA
AA sequence Show only first row Show all	>Potri.006G230800.1 pacid=42768482 polypeptide=Potri.006G230800.1.p locus=Potri.006G230800 ID=Potri.006G230800.1.v4.1 annot-version=v4.1 MGDSSDSVSIDMETPSLSGKEYVVETCCGYVSVSVYGDQDKPALVTYPDLALNHISCFQGLFFCPEACSLLLHNFCIYHISPPGHELGAATISPDDPLLS VDDLADQIADVLNYFGLDAVMCMGVTAGAYILTLFAMKYRQRVLGLILISPLCNAPSWTEWLYNKVLSNLLYYYGMCGVVKELLLKRYFSKQEARGSAQV PESDVVQACRRLLDERQGLNVWRFLEAMNGRQDISDGLRKLRCRSLIYVGESSPFHFEALDMNSKLDRRCSALVEVQACGSMVTEEQPHAMLIPLEYFLM GYGMYRPPKLSVSPRSPLSPICISPELLSPESMGLKLKPIKTRISLEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Potri.006G230800 [exp]	0	1
AT5G42360			Galactose oxidase/kelch repeat...		Potri.005G253500 [exp]	6.00	0.8144
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.010G193100 [exp]	7.28	0.8396
AT4G32400		EMB42, EMB104, ...	SODIUM HYPERSENSITIVE 1, EMBRY...		Potri.006G252100 [exp]	15.49	0.8022
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Potri.005G186400 [exp]	19.62	0.8149	MYB158,MYB.50
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Potri.017G016700 [exp]	20.00	0.8212
AT1G51630			O-fucosyltransferase family pr...		Potri.010G250600 [exp]	22.80	0.7887
AT3G28850			Glutaredoxin family protein (....		Potri.017G081600 [exp]	27.94	0.8019
AT1G47200		WPP2	WPP domain protein 2 (.1)		Potri.002G122000 [exp]	29.12	0.8172	Pt-MAF1.1
AT4G30600			signal recognition particle re...		Potri.006G183600 [exp]	31.36	0.8067
AT2G13350			Calcium-dependent lipid-bindin...		Potri.001G458101 [exp]	43.01	0.7846

Compare expression of checked genes

Potri.006G230800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.