Plant FIBer expression Database

Potri.006G230900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11780 312 / 1e-100 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040547
[exp]
238 / 1e-71 AT5G11780 167 / 2e-45 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G230900.2 pacid=42769178 polypeptide=Potri.006G230900.2.p locus=Potri.006G230900 ID=Potri.006G230900.2.v4.1 annot-version=v4.1
ATGAACCAACACTCCCCAAATTCAAATTCCAACTCTCTCCAACCGCTCCTGAAAGAATCAATCCACAGGTTCTTAATTGAACACCAAAACGGTGCAACTG
ATTTTTCAAATTTCACCTCAATCTTCTCTCGCTTTCTCCACAATTTACCCGACCCACCCCTAGAAATCGTCTGGTTTTACTCCGCTTTAACTTTTCACTC
CACAAAATTTACTGACACTTCAAAGCAAGTCTTATTAGTTAAGGACCTATTTCAGTTACTTGTTTCCTGCTCTTCCTCATGCAATGCTGTTAAAAAAATT
GCCGTACTCGCTCCGGTTATTCACGAGCTGTTTACTGCAGTGAGTGGTAAAAAGGATTTGAGAGAAGAGATTGAGAGTTTAACTGAAGGGATCATCTGTT
ATGTTAGCATTAAATGTGCTGATAATTCTGATGAACATGAAGGGTTTGGGGATTTAGTTTCGTGTTATAGGGAGCTAGTGCGCGTGTGGATGGTTGGGAA
AATTGGGGGTGACTGTAAATTTGGGGAGGATTTGAGGTTGTTTTGTCCGGTTGTTAGCGATGGAGTACGCGAAGGAATGGTAAGTGAGGGTTTTGGAGTT
GGGTACTTGGCTGGTGTAGTCACGTGTGAGGCTTTTTTGTTGAGGTTGTGCTTGAAGTTTGGGTGTGGGTTTTCAAGAGTAGAGCTGGAGAAAGAATTGC
TTAACGGCGCGGCTCAGATGATAAGTGCTTTTCGGAGTTATTATTTTGTCGATATCCTGCTTAGGATGCTGCTGGAGCCAGTTTTACCTGTCAATGCAAT
GCTGAATCCCAAAGATGAGGTCATTTTACGAGAAGTCTTGTATGATGTTGTGATAACGATGTCATATTCCTTCTCTATCCCTCAAAAAGGGATTGAGCCA
CCTGGTGTACAATTGAAAAATCTTGCTCTGACATGGTTGTTTGTTGCTGACAATGCCATACGATTTGTCAGGGAAAATGGGGACCGGACAAAAGTCATTT
CTTATTTGCAAGCCTTCTCTGAATCTTTCTTACTCTCCCATTTGATCAAGTGGGTTATGAGCCAGCCTGGTGTGCAGAGTAAAACAAATGCACCGGATAT
TTTCACTCCTGTTGCTGTCATCAAGTGGCTACTTATTGTTGAGGATGAAGGTTCAAGGGTGTTCGATAGTGGCATCTCCAAGATATATGCAAAGGCCATT
ATTTGTAAATCAAGAACAGAGTGTGAGCTTTTGGTTGATAAGTCAGGTGGCAAGAATTTGAATGAAAATCACTTTTTTTACCCTGGTAAGGAGCTTAAAG
CTGAAGATAAAGTAGATGGTGATCTAGAGATGGTTGATTCTGCGGACACGATGCTCCTTGGTGCTCCTGGATTGATGAGATTGACGGAAACTGATGGTAT
AAGGAAACGCAAAGAAGGAAGAAACGACGAAGGGGATAAACGAGTTAAGTTTTTCAAATGTCAGCTTGGTGACAAGTTAACAAAGGAGGAGAAGGTTTGG
CCATTGTGTGATGGTGGTGGTTTTTGCAGTGGGAGTGAGATATACAATCCTTTGTCTGTTGAAAATGCAGTGTCTATGGAGCAATAA
AA sequence
>Potri.006G230900.2 pacid=42769178 polypeptide=Potri.006G230900.2.p locus=Potri.006G230900 ID=Potri.006G230900.2.v4.1 annot-version=v4.1
MNQHSPNSNSNSLQPLLKESIHRFLIEHQNGATDFSNFTSIFSRFLHNLPDPPLEIVWFYSALTFHSTKFTDTSKQVLLVKDLFQLLVSCSSSCNAVKKI
AVLAPVIHELFTAVSGKKDLREEIESLTEGIICYVSIKCADNSDEHEGFGDLVSCYRELVRVWMVGKIGGDCKFGEDLRLFCPVVSDGVREGMVSEGFGV
GYLAGVVTCEAFLLRLCLKFGCGFSRVELEKELLNGAAQMISAFRSYYFVDILLRMLLEPVLPVNAMLNPKDEVILREVLYDVVITMSYSFSIPQKGIEP
PGVQLKNLALTWLFVADNAIRFVRENGDRTKVISYLQAFSESFLLSHLIKWVMSQPGVQSKTNAPDIFTPVAVIKWLLIVEDEGSRVFDSGISKIYAKAI
ICKSRTECELLVDKSGGKNLNENHFFYPGKELKAEDKVDGDLEMVDSADTMLLGAPGLMRLTETDGIRKRKEGRNDEGDKRVKFFKCQLGDKLTKEEKVW
PLCDGGGFCSGSEIYNPLSVENAVSMEQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G11780 unknown protein Potri.006G230900
[exp]
0 1
AT4G36930 bHLH SPT, bHLH024 SPATULA, basic helix-loop-heli... Potri.014G025800
[exp]
15.26 0.7464 ALC.2
AT3G27060 ATTSO2, TSO2 TSO MEANING 'UGLY' IN CHINESE ... Potri.017G063900
[exp]
23.66 0.7312
AT3G06740 GATA GATA15 GATA transcription factor 15 (... Potri.010G001300
[exp]
23.91 0.6843
AT5G27740 RFC3, EMB251, E... replication factor C 3, EMBRYO... Potri.019G040000
[exp]
36.33 0.7106
AT3G23740 unknown protein Potri.002G236300
[exp]
38.72 0.7157
AT2G47920 Kinase interacting (KIP1-like)... Potri.014G135000
[exp]
48.00 0.6929
AT1G54510 ATNEK1 NIMA-related serine/threonine ... Potri.013G039000
[exp]
57.23 0.6969
AT5G58600 TBL44, PMR5 TRICHOME BIREFRINGENCE-LIKE 44... Potri.009G072800
[exp]
57.27 0.6657
AT3G50950 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.... Potri.013G056000
[exp]
57.29 0.6443
AT3G59670 unknown protein Potri.013G127100
[exp]
65.74 0.6730

Potri.006G230900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.