Plant FIBer expression Database

Potri.006G231000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G17720 832 / 0 ATBBETA, ATB BETA Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
AT1G51690 801 / 0 ATB ALPHA, ATBALPHA protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G055001
[exp]
973 / 0 AT1G17720 823 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
Potri.001G197300
[exp]
842 / 0 AT1G17720 861 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
Potri.003G034300
[exp]
824 / 0 AT1G17720 840 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
Potri.015G079300
[exp]
584 / 0 AT1G17720 547 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015635
[exp]
858 / 0 AT1G17720 878 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
Lus10037653
[exp]
857 / 0 AT1G17720 879 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
Lus10012083
[exp]
660 / 0 AT1G17720 669 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
Lus10001239
[exp]
543 / 0 AT1G17720 576 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
Lus10042101
[exp]
537 / 0 AT1G17720 570 / 0.0 Protein phosphatase 2A, regulatory subunit PR55 (.1.2)
Lus10007401
[exp]
456 / 4e-157 AT1G51690 460 / 7e-159 protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (.1.2.3)
PFAM info
Representative CDS sequence
>Potri.006G231000.1 pacid=42767254 polypeptide=Potri.006G231000.1.p locus=Potri.006G231000 ID=Potri.006G231000.1.v4.1 annot-version=v4.1
ATGAACGGAGGCGGCAGCGAAGAAGCTGCGGAGGCTGTGACGGCAGCGGCAGCACCGGTGGGAGCGCCGTTGCAGCTTGAATGGAAATTCGCGCAGGTTT
TTGGAGAGCGAACGGCCGGTGAAGAAGTACAGGAAGTCGATATCATATCTGCCATTGAATTTGATAGAACTGGCGATCATCTCGCTACTGGTGATCGTGG
AGGTCGAGTGGTTTTATTTGAAAGAACTGACACAAGAGATCATGGTGGAAATCGGAGAGATCTAGAGAGGATGGATTTTCCAATTAACAGGCACCCTGAG
TTCCGTTACAAAACAGAGTTTCAGAGCCACGAACCGGAGTTTGATTATCTGAAGAGCTTGGAAATTGAGGAGAAGATCAACAAGATTAAATGGTGCCAGT
CAGCCAATGGTGCATTGTTTCTTCTGTCGACTAATGACAAAACCATCAAATTTTGGAAGGTTCAAGAAAAGAAGGTCAAGAAAATATGTGACATGAATGT
TGACCCTGCAAAAGCTGCTGGAAATGGTCCTCTTGTAGGTCCAAGCATATCAACAAGCTCCAAACCATATACTGCCAACGGGGGATGTTTGGATAAACCC
TTGGGTTTGAGCAATGACTTTTCTTTTCCACCTGGGGGTGTCTCGTCTCTACATTTACCTGTGGTATTGACCAGTATTGAAACGAGCCTCGTGCCTAGGT
GTCGGAGAATATATGCTCATGCCCATGACTATCATATTAACTCCATTTCTAACAACAGTGATGGTGAAACTTTTATATCTGCTGATGATCTGCGAATAAA
TCTTTGGAATTTGGAAATAAGCAATCAGAGTTTCAATATTGTTGATGTAAAGCCTGCAAACATGGAGGATCTGACTGAGGTGATAACTTCAGCAGAATTT
CATCCTACTCATTGTAATATGTTGGCATATAGTAGTTCAAGGGGCTCAATTCGTTTAGTTGACATGCGACAGTCAGCTCTATGTGATTCTCATAGCAAAT
TGTTTGAGGAACAAGAGGTGCCTGGTTCAAGATCCTTCTTCACGGAGATAATTGCCTCAATCTCAGATATTAAATTTGCCAAGGATGGAAGATATATTCT
TAGTCGTGATTACATGACTCTCAAGTTGTGGGACATAAATATGGACTCTGGACCAGTTTCCACCTTCCAGGTTCATGAATACCTTAGACCTAAGCTTTGT
GATCTGTATGAAAACGATTCCATCTTTGACAAATTCGAGTGTTGTCTGAGTGGAGATGGACTTCGAGTGGCAACTGGTTCCTACAGCAACCTATTCCGAG
TGTTTGGTTGTACTGATGGAAGCACTGAAGCAACAACATTGGAAGCCAGCAAGAATCCAATGAGGAGACAGGTTCAAACCCCATCAAGGCCTTCTAGATC
TCTGGGCACCCTTTCCCGTGGTTTTAGGCGAGGAGCTGACACCTCTGGAGCTGATACAAATGGAAATGCGTTTGATTTCACAACCAAGTTGTTGCATCTA
GCATGGCATCCAACCGAGAACTCACTCGCCTGTGCTGCTTCAAACAGCCTTTACATGTATTATGCATGA
AA sequence
>Potri.006G231000.1 pacid=42767254 polypeptide=Potri.006G231000.1.p locus=Potri.006G231000 ID=Potri.006G231000.1.v4.1 annot-version=v4.1
MNGGGSEEAAEAVTAAAAPVGAPLQLEWKFAQVFGERTAGEEVQEVDIISAIEFDRTGDHLATGDRGGRVVLFERTDTRDHGGNRRDLERMDFPINRHPE
FRYKTEFQSHEPEFDYLKSLEIEEKINKIKWCQSANGALFLLSTNDKTIKFWKVQEKKVKKICDMNVDPAKAAGNGPLVGPSISTSSKPYTANGGCLDKP
LGLSNDFSFPPGGVSSLHLPVVLTSIETSLVPRCRRIYAHAHDYHINSISNNSDGETFISADDLRINLWNLEISNQSFNIVDVKPANMEDLTEVITSAEF
HPTHCNMLAYSSSRGSIRLVDMRQSALCDSHSKLFEEQEVPGSRSFFTEIIASISDIKFAKDGRYILSRDYMTLKLWDINMDSGPVSTFQVHEYLRPKLC
DLYENDSIFDKFECCLSGDGLRVATGSYSNLFRVFGCTDGSTEATTLEASKNPMRRQVQTPSRPSRSLGTLSRGFRRGADTSGADTNGNAFDFTTKLLHL
AWHPTENSLACAASNSLYMYYA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G17720 ATBBETA, ATB BE... Protein phosphatase 2A, regula... Potri.006G231000
[exp]
0 1
AT4G17150 alpha/beta-Hydrolases superfam... Potri.016G001000
[exp]
2.82 0.8233
AT1G52150 HD ATHB15, ICU4, C... INCURVATA 4, CORONA, Homeobox-... Potri.003G050100
[exp]
6.24 0.8138 ATHB.11
AT1G32960 ATSBT3.3 Subtilase family protein (.1) Potri.001G450600
[exp]
7.74 0.7855
AT1G52150 HD ATHB15, ICU4, C... INCURVATA 4, CORONA, Homeobox-... Potri.001G188800
[exp]
9.11 0.8373 ATHB.12
AT3G27530 MAG4, GC6 MAIGO 4, golgin candidate 6 (.... Potri.001G343500
[exp]
9.94 0.7220
AT3G63120 CYCP1;1 cyclin p1;1 (.1) Potri.005G209800
[exp]
9.94 0.7956
AT1G55340 Protein of unknown function (D... Potri.001G004000
[exp]
16.70 0.7601
AT1G60940 SNRK2-10, SNRK2... SNF1-RELATED KINASE 2B, SUCROS... Potri.004G218001
[exp]
17.20 0.8137
AT5G18940 Mo25 family protein (.1.2) Potri.008G198900
[exp]
18.81 0.8025
AT5G55000 FIP2 potassium channel tetramerisat... Potri.019G038400
[exp]
22.58 0.7841

Potri.006G231000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.