Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 487 / 8e-166 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 479 / 1e-162 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 478 / 1e-162 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 471 / 4e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 463 / 6e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G62890 455 / 4e-154 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G59720 447 / 5e-150 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33760 440 / 4e-148 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 441 / 9e-148 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G237000 [exp] 520 / 5e-179 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 511 / 2e-175 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 492 / 9e-168 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G012600 [exp] 486 / 5e-165 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 484 / 1e-164 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G035900 [exp] 475 / 4e-161 AT1G74630 884 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G011000 [exp] 479 / 1e-160 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 473 / 3e-160 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G119000 [exp] 469 / 2e-158 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031423 [exp] 497 / 3e-169 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 493 / 3e-168 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026006 [exp] 492 / 9e-168 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 492 / 3e-167 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 491 / 3e-167 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 489 / 3e-166 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 487 / 8e-166 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 486 / 2e-164 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025490 [exp] 471 / 1e-159 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013319 [exp] 453 / 4e-153 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.006G231200.4 pacid=42767837 polypeptide=Potri.006G231200.4.p locus=Potri.006G231200 ID=Potri.006G231200.4.v4.1 annot-version=v4.1 ATGATTTTGTCTCGAAACCTAATATCCTTATCCCAAACAAAGCAAGCCCATGCTCGCATCATTGTCTCCGGTCTCGCAGGCAAAGCATCCCTTATGGGTC ATATCCTTTCTTTCCTTGCTACATTCCCTTCCAGCCCCTTTGATTACTCCCTCTCAATTTACCGTACAATCAAAAACCCAAACGTTTTTGCCTCCAATAA CATGATTCGGTGCTTTGCCAAGAGCGACTTGCCTCTACAATCACTTGTTCTTTACTCTAGTGTCTTAAGAAACTGTGTAAGACCCAATAACTATAGTTTT ACTTTTCTCTTGCAAGCTTGTAGTAAGGGTTTGGGTTTGGTTGAAGGGGTTCAAGTTCATGGGCATGTGCTTAAACTTGGTTTTGGTGAGGATGTTTATG TGAGAAATGCATTGATCCATTTATATTCTTCTTGTTGTAGAACTGAGAGTTCAAAACAAGTGTTTGATGAAAGTCCGCATCATTGTGACGTTGTTACTTG GAATGCAATGTTGGCTGGTTTTGCAAGAGACGGGCAGGTTAGTGTTGTACAGAAATTGTTTGATGAAATGCCTGAAAGAGATGTCATTTCGTGGAATACG ATGCTTATGGCCTATGTTCATAATGGGAAGCTTGGAGAAGCCTTAGAGTGTTTTAAGAGGATGAGAGAGAGTGGGTTAGTACCAGATGAGGCCACGTTGG TGACAATGCTCTCAGCATCAGCACAATTATGTTTGCTTGAACATGGTCAGTCGATTCATTCGATTATAGATTCTTTGAGTCTCCCAATGACTATCAGCAT CGGTACTGCGCTTCTGGACATGTATGCAAAATGTGGATGCATTGAACAGTCTAGGCTTTTGTTTGAAAACATGCCTCGAAGAGATGTTTCTACATGGAAT GTTATGATTTGTGGATTGGCCTCGCATGGACTTGGAAAGGATGCTCTCACACTCTTTGAGAGGTTCTTAAATGAAGGACTTCATCCCATGAATGTAACCT TTGTGGGGGTTCTGAATGCTTGTAGTCGAGCAGGTTTGGTTAAGGAGGGCAGACATTATTTTCAGATGATGACAGATAGCTATGGCATTGAGCCGGAGAT GGAGCATTATGGCTGCATGGTTGATCTCTTAGGACGAGCTGGTTTAGTATTTGAGGCTATCAAAGTGATTGAGAGCATGGCTATCTCACCAGACCCGGTG TTGTGGGCAATGGTTCTGTGTGCTTGTAGGATTCATGGATTAGCAGAACTGGGTGAAAAAATTGGGAATAGACTAATAGAACTGGACCCAACCTATGATG GACATTATGTGCAATTAGCTAGTATTTATGCCAATTCCAGGAAATGGGAAGATGTAGTTAGAGTTCGAAGATTGATGGCTGAGAGAAACACTAGTAAAGT TGCAGGTTGGAGCTTGATAGAAGCCCGAGGAAAAGTACATCGATTTGTTGCAGGGCATAGAGAGCATGAGCAGTCTCTAGAGATACAAAAGATGCTTGAA ATAATTGAAACTCGGTTAGCAGCAGCTGGCTATGTTCCCAACGTTTCACCTGTCTTACATGATATTGGAGAGGAAGAAAAGGAGAATGCAATTAAGGTGC ACAGTGAGAGGTTAGCTATTGCATTTGGTCTTCTGGTTACAGGGCCTGGAAGTTGCATTCGGATAGTGAAGAACCTGAGGGTTTGTTGGGATTGTCATGA GGTGACCAAGATGATATCAAGAGTGTTTGAAAGGGAGATAATTGTAAGGGATGGGAGCAGATTTCATCATTTTAAGGAAGGGAAATGCTCATGTCTAGAT TATTGGTAG
AA sequence Show only first row Show all	>Potri.006G231200.4 pacid=42767837 polypeptide=Potri.006G231200.4.p locus=Potri.006G231200 ID=Potri.006G231200.4.v4.1 annot-version=v4.1 MILSRNLISLSQTKQAHARIIVSGLAGKASLMGHILSFLATFPSSPFDYSLSIYRTIKNPNVFASNNMIRCFAKSDLPLQSLVLYSSVLRNCVRPNNYSF TFLLQACSKGLGLVEGVQVHGHVLKLGFGEDVYVRNALIHLYSSCCRTESSKQVFDESPHHCDVVTWNAMLAGFARDGQVSVVQKLFDEMPERDVISWNT MLMAYVHNGKLGEALECFKRMRESGLVPDEATLVTMLSASAQLCLLEHGQSIHSIIDSLSLPMTISIGTALLDMYAKCGCIEQSRLLFENMPRRDVSTWN VMICGLASHGLGKDALTLFERFLNEGLHPMNVTFVGVLNACSRAGLVKEGRHYFQMMTDSYGIEPEMEHYGCMVDLLGRAGLVFEAIKVIESMAISPDPV LWAMVLCACRIHGLAELGEKIGNRLIELDPTYDGHYVQLASIYANSRKWEDVVRVRRLMAERNTSKVAGWSLIEARGKVHRFVAGHREHEQSLEIQKMLE IIETRLAAAGYVPNVSPVLHDIGEEEKENAIKVHSERLAIAFGLLVTGPGSCIRIVKNLRVCWDCHEVTKMISRVFEREIIVRDGSRFHHFKEGKCSCLD YW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.006G231200 [exp]	0	1
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Potri.010G234700 [exp]	6.92	0.7700	CTR1.4
AT3G08770		LTP6	lipid transfer protein 6 (.1.2...		Potri.011G021900 [exp]	13.85	0.7126
AT4G08850			Leucine-rich repeat receptor-l...		Potri.003G108200 [exp]	22.44	0.6915
					Potri.010G070301 [exp]	22.51	0.7184
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052600 [exp]	35.77	0.6615
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G023151 [exp]	36.74	0.6802
AT1G30760			FAD-binding Berberine family p...		Potri.011G161500 [exp]	61.25	0.6717
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.006G022800 [exp]	61.44	0.6557
AT1G57680			unknown protein		Potri.012G023500 [exp]	62.92	0.6441
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Potri.002G155000 [exp]	68.27	0.6677

Compare expression of checked genes

Potri.006G231200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.