Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11770 303 / 7e-106 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1) ATCG00430 141 / 7e-42 ATCG00430.1, PSBG photosystem II reaction center protein G (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G163100 [exp] 140 / 2e-41 ATCG00430 409 / 4e-147 photosystem II reaction center protein G (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014530 [exp] 295 / 2e-102 AT5G11770 360 / 4e-128 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1) Lus10039485 [exp] 290 / 2e-100 AT5G11770 352 / 4e-125 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1) Lus10032157 [exp] 239 / 2e-81 AT5G11770 277 / 7e-97 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1) Lus10032155 [exp] 239 / 2e-81 AT5G11770 277 / 7e-97 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01058 [poplar] [flax] Oxidored_q6 NADH ubiquinone oxidoreductase, 20 Kd subunit
Representative CDS sequence Show only first row Show all	>Potri.006G231701.1 pacid=42767282 polypeptide=Potri.006G231701.1.p locus=Potri.006G231701 ID=Potri.006G231701.1.v4.1 annot-version=v4.1 ATGGCAATGATCACCAGAAACACCGCCACACGCCTCCCACACCTCCTCTCCATCCATCGCCCCGCCACCGCATCTCTCCACACCACCCTCCCATCTCTCT CCCCTGAACCAACACCAGCTCCCTACACTCGCGCACCGCCACCTTCCTCATCCTCACTAACAGGTCTTTCTAAGCCGGCGGAGTTTGTGATTTCCAAGGT TGATAGTTTGATGAACTGGGCTCGCACTGGATCTATTTGGCCTATGACTTTTGGGCTTGCCTGTTGTGCTGTTGAGATGATGCATACCGGTGCTGCCAGA TATGATTTGGATCGGTTCGGGATTATTTTTAGACCGAGTCCTAGGCAGTCTGACTGTATGATTGTTGCTGGTACTCTTACTAACAAAATGGCCCCTGCTC TTCGCAAGGTTTATGATCAAATGCCTGAGCCTAGGTGGGTCATCTCCATGGGCAGCTGTGCAAATGGTGGTGGATATTACCATTATTCGTACTCTGTTGT TCGTGGTTGTGACAGGATTGTCCCTGTTGACATTTATGTTCCAGGATGCCCACCCACTGCTGAGGCCCTACTTTATGGATTACTCCAGCTGCAGAAAAAG ATCCACAGGCGCAAGGACTTCCTCCATTGGTGGACCAGATAG
AA sequence Show only first row Show all	>Potri.006G231701.1 pacid=42767282 polypeptide=Potri.006G231701.1.p locus=Potri.006G231701 ID=Potri.006G231701.1.v4.1 annot-version=v4.1 MAMITRNTATRLPHLLSIHRPATASLHTTLPSLSPEPTPAPYTRAPPPSSSSLTGLSKPAEFVISKVDSLMNWARTGSIWPMTFGLACCAVEMMHTGAAR YDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKK IHRRKDFLHWWTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11770			NADH-ubiquinone oxidoreductase...		Potri.006G231701 [exp]	0	1
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Potri.001G356100 [exp]	7.48	0.7467	Pt-ERF3.1,ERF40
AT3G48800			Sterile alpha motif (SAM) doma...		Potri.001G062800 [exp]	9.59	0.8176
AT5G48660			B-cell receptor-associated pro...		Potri.014G191500 [exp]	9.74	0.8030
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Potri.008G052801 [exp]	12.80	0.8053
AT4G09830			Uncharacterised conserved prot...		Potri.005G196400 [exp]	16.97	0.7980
AT4G13270			Late embryogenesis abundant (L...		Potri.006G159400 [exp]	20.78	0.7575
AT3G58610			ketol-acid reductoisomerase (....		Potri.011G052700 [exp]	28.86	0.7814
AT5G49060			Heat shock protein DnaJ, N-ter...		Potri.010G013200 [exp]	29.39	0.7679
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.002G226000 [exp]	29.46	0.8013
AT2G44020			Mitochondrial transcription te...		Potri.013G116700 [exp]	33.10	0.7989

Compare expression of checked genes

Potri.006G231701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.