Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26030 621 / 0 FC1, FC-I, ATFC-I ferrochelatase 1 (.1.2) AT2G30390 515 / 2e-180 FC2, FC-II, ATFC-II ferrochelatase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T010900 [exp] 530 / 0 AT2G30390 756 / 0.0 ferrochelatase 2 (.1.2) Potri.004G138400 [exp] 529 / 0 AT2G30390 747 / 0.0 ferrochelatase 2 (.1.2) Potri.T010901 [exp] 527 / 0 AT2G30390 734 / 0.0 ferrochelatase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023607 [exp] 668 / 0 AT5G26030 652 / 0.0 ferrochelatase 1 (.1.2) Lus10024237 [exp] 665 / 0 AT5G26030 650 / 0.0 ferrochelatase 1 (.1.2) Lus10007924 [exp] 655 / 0 AT5G26030 640 / 0.0 ferrochelatase 1 (.1.2) Lus10019224 [exp] 505 / 4e-176 AT2G30390 729 / 0.0 ferrochelatase 2 (.1.2) Lus10004292 [exp] 494 / 5e-172 AT2G30390 713 / 0.0 ferrochelatase 2 (.1.2) Lus10013461 [exp] 471 / 2e-164 AT5G26030 473 / 1e-165 ferrochelatase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0043 [poplar] [flax] Chelatase PF00762 [poplar] [flax] Ferrochelatase Ferrochelatase
Representative CDS sequence Show only first row Show all	>Potri.006G232100.2 pacid=42767913 polypeptide=Potri.006G232100.2.p locus=Potri.006G232100 ID=Potri.006G232100.2.v4.1 annot-version=v4.1 ATGGACGCGACGTCGTTCTGTGGTGCGCTTCCCCAGACGAAGCTCTCTGCTTCCAATCGTAATTTCTCAAGGTCGTGCCCGCGTGCTAGATCTGTTGTTT CAGTAGCTAGGCACTCGTCCGAGGAATTTCAGCAGCCGGATAAACTTTATTCTCGAGAATCGTTAGTGGTTTCGAGTTTTAGTTCGGCTAACAAGGGAAT GACAGCTAGCGGGAGATCATACTTGTCTGGTCCGGTTATGAAGAGAAATCCGGTTCGGCAAGCATTCTGCGCTGCCTCTGTAGTTGGAGTAGGCGCATAT TGTGAAGGTTTTGTTGATTCTCATTTGCATGTGACAGAAGAAAAGGTTGGCGTGCTTCTTTTGAATCTTGGAGGGCCCGAAACGCTTAATGATGTCCAGC CGTTTTTGTTCAATTTGTTTGCTGATCCAGATATTATAAGACTTCCCAGGCTGTTTCAATTTCTTCAGAAACCTTTGGCAAAATTAATTTCTGTGCTTCG TGCTCCTAAAAGTAAAGAAGGGTATGCTTCTATTGGAGGGGGCTCGCCTTTGCGTAAAATAACGGATGAGCAGGCTGATGGAATCAAAATGGCTTTGAAA GCAAAGGGTTTGACTGCAAATGTCTACGTTGGAATGAGGTATTGGTACCCATTCACTGAGGAAGCAATTCATCAGATCAAGAAGGACAAGATAACGAAGC TTGTAGTGCTGCCACTTTATCCGCAGTTCTCGATCTCCACAACTGGGTCAAGCCTCCGTGTTCTCCAGAATATATTTAGTGAAGATGCATATCTATCAAG GCTTCCAATTGCCATTATACAGTCCTGGTATCAACGAGAAGGTTATATCAAGTCTATGGCTGACTTGATTGGTGAAGAGCTGCAAAAATTTGCTAAACCT GAAGAGGTCATGATATTCTTCAGTGCCCATGGAGTGCCATTGACTTACGTGGAGGATGCAGGAGACCCATACAAAGATCAAATGGAAGAGTGCATCTACT TAATAATGCAAGAGTTGAAAGCTAGAGGATCTTACAATGATCATACTCTTGCTTACCAGAGCCGAGTTGGACCTGTGCAATGGCTGAAGCCCTACACTGA TGAAGTTCTTGTTGAGCTTGGTCAGAAAGGTGTCAAAAGTCTTCTAGCTGTACCAGTAAGCTTTGTCAGTGAGCACATAGAGACACTTGAAGAGATTGAT ATGGAATATAAGGAGTTGGCTCTGGAATCTGGCATTGAGAATTGGGGTCGTGTACCTGCTCTGGGTTGCACTTCATCCTTCATCACAGATTTGGCAGATG CAGTGATAGAAGCCCTACCTTCAGCTAAATCCTTTTCAACCACAAGGAGCACCTCTGAAGAATCTGACCGTGACTTTTTGAGCTATGCTATTAAAATGAT TTTTGGTTCAGTCTTGGCATTTGTCTTGCTTTTTTCCCCAAAAGTGATTACGGCATTCAGGAACCTTCTCTTTTAA
AA sequence Show only first row Show all	>Potri.006G232100.2 pacid=42767913 polypeptide=Potri.006G232100.2.p locus=Potri.006G232100 ID=Potri.006G232100.2.v4.1 annot-version=v4.1 MDATSFCGALPQTKLSASNRNFSRSCPRARSVVSVARHSSEEFQQPDKLYSRESLVVSSFSSANKGMTASGRSYLSGPVMKRNPVRQAFCAASVVGVGAY CEGFVDSHLHVTEEKVGVLLLNLGGPETLNDVQPFLFNLFADPDIIRLPRLFQFLQKPLAKLISVLRAPKSKEGYASIGGGSPLRKITDEQADGIKMALK AKGLTANVYVGMRYWYPFTEEAIHQIKKDKITKLVVLPLYPQFSISTTGSSLRVLQNIFSEDAYLSRLPIAIIQSWYQREGYIKSMADLIGEELQKFAKP EEVMIFFSAHGVPLTYVEDAGDPYKDQMEECIYLIMQELKARGSYNDHTLAYQSRVGPVQWLKPYTDEVLVELGQKGVKSLLAVPVSFVSEHIETLEEID MEYKELALESGIENWGRVPALGCTSSFITDLADAVIEALPSAKSFSTTRSTSEESDRDFLSYAIKMIFGSVLAFVLLFSPKVITAFRNLLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26030		FC1, FC-I, ATFC...	ferrochelatase 1 (.1.2)		Potri.006G232100 [exp]	0	1
AT5G23360			GRAM domain-containing protein...		Potri.017G152900 [exp]	1.41	0.7668
AT3G61790			Protein with RING/U-box and TR...		Potri.001G026200 [exp]	4.89	0.7431
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.001G310500 [exp]	7.48	0.7903
AT3G17120			unknown protein		Potri.010G148200 [exp]	9.21	0.6770
AT1G29690		CAD1	constitutively activated cell ...		Potri.004G064000 [exp]	10.95	0.7250
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Potri.010G010500 [exp]	12.96	0.7392
AT2G04515			unknown protein		Potri.014G166900 [exp]	15.87	0.6981
AT1G29690		CAD1	constitutively activated cell ...		Potri.011G075500 [exp]	16.73	0.7023
AT3G17380			TRAF-like family protein (.1)		Potri.014G055400 [exp]	17.66	0.6914
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Potri.012G007500 [exp]	18.49	0.7059

Compare expression of checked genes

Potri.006G232100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.