Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10770 418 / 4e-143 Eukaryotic aspartyl protease family protein (.1) AT5G10760 389 / 8e-132 Eukaryotic aspartyl protease family protein (.1) AT1G79720 244 / 3e-75 Eukaryotic aspartyl protease family protein (.1) AT1G01300 229 / 1e-69 Eukaryotic aspartyl protease family protein (.1) AT3G61820 219 / 1e-65 Eukaryotic aspartyl protease family protein (.1) AT1G25510 217 / 6e-65 Eukaryotic aspartyl protease family protein (.1) AT3G20015 208 / 8e-62 Eukaryotic aspartyl protease family protein (.1) AT3G18490 198 / 1e-57 Eukaryotic aspartyl protease family protein (.1) AT2G03200 176 / 1e-49 Eukaryotic aspartyl protease family protein (.1) AT2G42980 177 / 2e-49 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232500 [exp] 808 / 0 AT5G10770 334 / 2e-110 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 546 / 0 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.018G014700 [exp] 520 / 0 AT5G10770 407 / 1e-138 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 518 / 0 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1) Potri.018G014500 [exp] 502 / 7e-176 AT5G10760 329 / 3e-108 Eukaryotic aspartyl protease family protein (.1) Potri.018G014600 [exp] 482 / 4e-168 AT5G10770 371 / 1e-124 Eukaryotic aspartyl protease family protein (.1) Potri.018G015100 [exp] 458 / 2e-158 AT5G10770 483 / 5e-168 Eukaryotic aspartyl protease family protein (.1) Potri.018G014800 [exp] 370 / 2e-124 AT5G10770 312 / 9e-102 Eukaryotic aspartyl protease family protein (.1) Potri.001G041700 [exp] 265 / 1e-81 AT1G79720 521 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042426 [exp] 421 / 7e-144 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042427 [exp] 369 / 9e-123 AT5G10770 476 / 7e-165 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 249 / 4e-77 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10026243 [exp] 244 / 6e-76 AT5G10770 287 / 2e-92 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 231 / 5e-70 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10026244 [exp] 211 / 2e-62 AT5G10770 303 / 5e-98 Eukaryotic aspartyl protease family protein (.1) Lus10024098 [exp] 199 / 2e-58 AT1G79720 399 / 4e-136 Eukaryotic aspartyl protease family protein (.1) Lus10017362 [exp] 184 / 3e-52 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 183 / 4e-52 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10038732 [exp] 177 / 2e-50 AT5G10770 210 / 5e-63 Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.006G232400.1 pacid=42768773 polypeptide=Potri.006G232400.1.p locus=Potri.006G232400 ID=Potri.006G232400.1.v4.1 annot-version=v4.1 ATGGCCAATCTCATTTCTTCCATCAAATTTACCGGTTTCATCTATGTTTTTCTTCTTTTTCTATGCCCTTTGTGTTCTCTGAAGAAGGGTTATGCAGTTG AAGCAAATGAGCATATAAAAAAATATGTTCATACCCTGGAAGTCAATTCTCTGTTGGCATCAGATTCCTGCGACCAATCTAGTAAGGTGATCGACAAGGC TTCATCTCTGCAAGTTCTGCACAAGTATGGTCCGTGCATGCAAGTACTGAATGATCGGTCACATGTAGAATTCCTCCTCCAAGACCAACTTCGAGTGGAC TCGATTCAAGCTAGACTTTCCAAGATCTCAGGCCATGGCATTTTTGAGGAGATGGTGACAAAACTACCAGCCCAGTCTGGTATAGCCATCGGCACAGGCA ACTACGTGGTTACTGTCGGCCTTGGCACACCAAAAGAGGATTTTACCCTTGTATTCGACACCGGCAGTGGCATCACTTGGACTCAATGTCAGCCATGCTT AGGGTCCTGCTATCCGCAAAAGGAACAAAAGTTCGATCCAACCAAGTCAACCTCATACAATAATGTTTCGTGTTCCTCAGCATCATGCAACTTGCTCCCT ACCAGTGAAAGGGGTTGCTCTGCCTCAAACTCGACATGCCTCTACCAAATTATTTATGGTGACCAATCCTACTCCCAAGGATTTTTCGCCACCGAAACAC TAACCATTTCATCATCGGACGTTTTCACAAACTTCCTGTTCGGGTGCGGCCAAAGCAATAATGGCTTGTTCGGCCAGGCAGCCGGTTTGCTAGGACTAAG CTCCTCTTCGGTATCCTTACCATCACAAACTGCCGAGAAATACCAAAAGCAATTCTCTTATTGTTTACCTTCAACACCTAGCTCAACCGGCTACCTAAAC TTTGGTGGAAAAGTCTCCCAGACTGCGGGATTCACTCCAATATCCCCAGCTTTCTCAAGTTTTTATGGCATTGACATCGTTGGAATAAGTGTTGCAGGTT CCCAGCTACCAATAGATCCATCAATTTTTACTACGAGTGGAGCCATCATCGACTCCGGTACGGTCATCACTAGGCTGCCTCCTACAGCATACAAGGCACT CAAGGAAGCATTCGACGAAAAAATGTCGAATTATCCCAAGACAAACGGGGATGAACTGCTTGACACATGCTATGATTTTAGTAATTATACAACAGTTTCA TTTCCTAAGGTCAGTGTGTCCTTCAAAGGTGGGGTTGAAGTGGATATTGATGCATCGGGGATCCTGTACCTGGTGAACGGTGTCAAGATGGTCTGCCTGG CATTTGCAGCAAATAAGGATGACAGTGAATTTGGGATTTTCGGAAACCATCAGCAAAAGACCTACGAGGTTGTCTATGATGGTGCTAAAGGAATGATTGG TTTTGCAGCTGGTGCTTGTAGCTAA
AA sequence Show only first row Show all	>Potri.006G232400.1 pacid=42768773 polypeptide=Potri.006G232400.1.p locus=Potri.006G232400 ID=Potri.006G232400.1.v4.1 annot-version=v4.1 MANLISSIKFTGFIYVFLLFLCPLCSLKKGYAVEANEHIKKYVHTLEVNSLLASDSCDQSSKVIDKASSLQVLHKYGPCMQVLNDRSHVEFLLQDQLRVD SIQARLSKISGHGIFEEMVTKLPAQSGIAIGTGNYVVTVGLGTPKEDFTLVFDTGSGITWTQCQPCLGSCYPQKEQKFDPTKSTSYNNVSCSSASCNLLP TSERGCSASNSTCLYQIIYGDQSYSQGFFATETLTISSSDVFTNFLFGCGQSNNGLFGQAAGLLGLSSSSVSLPSQTAEKYQKQFSYCLPSTPSSTGYLN FGGKVSQTAGFTPISPAFSSFYGIDIVGISVAGSQLPIDPSIFTTSGAIIDSGTVITRLPPTAYKALKEAFDEKMSNYPKTNGDELLDTCYDFSNYTTVS FPKVSVSFKGGVEVDIDASGILYLVNGVKMVCLAFAANKDDSEFGIFGNHQQKTYEVVYDGAKGMIGFAAGACS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10770			Eukaryotic aspartyl protease f...		Potri.006G232400 [exp]	0	1
AT5G10770			Eukaryotic aspartyl protease f...		Potri.006G232500 [exp]	1.41	0.9995
AT4G39830			Cupredoxin superfamily protein...		Potri.001G454700 [exp]	4.47	0.9959
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G020700 [exp]	7.34	0.9916
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052800 [exp]	7.48	0.9919
AT2G41940	C2H2ZnF	ZFP8	zinc finger protein 8 (.1)		Potri.016G060600 [exp]	8.66	0.9886
AT1G29500			SAUR-like auxin-responsive pro...		Potri.009G141000 [exp]	9.64	0.9872
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Potri.001G310600 [exp]	10.48	0.9938
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Potri.002G189300 [exp]	12.40	0.9915
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Potri.012G047700 [exp]	13.85	0.9936
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.013G052900 [exp]	13.96	0.9913

Compare expression of checked genes

Potri.006G232400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.