Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26010 318 / 1e-107 Protein phosphatase 2C family protein (.1) AT4G32950 298 / 4e-100 Protein phosphatase 2C family protein (.1) AT1G79630 300 / 1e-98 Protein phosphatase 2C family protein (.1.2.3) AT5G36250 297 / 3e-98 Protein phosphatase 2C family protein (.1) AT1G03590 297 / 5e-98 Protein phosphatase 2C family protein (.1) AT1G16220 296 / 2e-97 Protein phosphatase 2C family protein (.1) AT4G03415 292 / 8e-96 Protein phosphatase 2C family protein (.1.2) AT3G02750 288 / 4e-94 Protein phosphatase 2C family protein (.1.2.3) AT5G01700 274 / 8e-90 Protein phosphatase 2C family protein (.1.2) AT3G05640 266 / 4e-87 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G059800 [exp] 590 / 0 AT5G26010 323 / 9e-110 Protein phosphatase 2C family protein (.1) Potri.019G054200 [exp] 303 / 6e-100 AT3G02750 657 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.019G103100 [exp] 302 / 1e-99 AT4G03415 706 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G144100 [exp] 301 / 2e-99 AT4G03415 696 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.013G085500 [exp] 301 / 2e-99 AT3G02750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Potri.001G473300 [exp] 300 / 2e-98 AT1G16220 538 / 0.0 Protein phosphatase 2C family protein (.1) Potri.004G066200 [exp] 298 / 1e-97 AT1G16220 526 / 0.0 Protein phosphatase 2C family protein (.1) Potri.006G105000 [exp] 291 / 3e-95 AT5G01700 368 / 1e-124 Protein phosphatase 2C family protein (.1.2) Potri.016G127900 [exp] 288 / 4e-94 AT5G01700 368 / 9e-125 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000402 [exp] 303 / 1e-99 AT1G79630 570 / 0.0 Protein phosphatase 2C family protein (.1.2.3) Lus10027122 [exp] 303 / 2e-99 AT1G16220 567 / 0.0 Protein phosphatase 2C family protein (.1) Lus10033708 [exp] 300 / 3e-99 AT1G03590 593 / 0.0 Protein phosphatase 2C family protein (.1) Lus10031631 [exp] 298 / 2e-98 AT1G03590 600 / 0.0 Protein phosphatase 2C family protein (.1) Lus10018570 [exp] 292 / 1e-95 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10022588 [exp] 290 / 1e-95 AT5G36250 421 / 1e-145 Protein phosphatase 2C family protein (.1) Lus10039802 [exp] 290 / 6e-95 AT4G03415 652 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10022683 [exp] 288 / 1e-94 AT3G02750 352 / 9e-119 Protein phosphatase 2C family protein (.1.2.3) Lus10014231 [exp] 288 / 1e-93 AT5G01700 360 / 1e-120 Protein phosphatase 2C family protein (.1.2) Lus10041277 [exp] 296 / 2e-91 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.006G232700.1 pacid=42767620 polypeptide=Potri.006G232700.1.p locus=Potri.006G232700 ID=Potri.006G232700.1.v4.1 annot-version=v4.1 ATGGGAATCTGCATATCCTCTGCATCTTCTGAGATACACCAGGCAGATGATGGCCTTGAAAATGTCATGCATGTCCAAGAAGATATTGTTTCTCATGGAA TTGAGAAGCGTGGTTCTCTTTACTCTAAAGAAGGAAGCAAGGGAGTAAACCAAGATGCTGCTGTTGTTCACCAGGGCTATGGAATGGAACATGGAGCTTT CTGTGGAGTTTTTGATGGGCATGGAAAGAATGGTCACATAGTGAGCAGGACTGTGAGAAATAGGTTGCCATCACTCTTGCTAAATCAGAAGAACGCTCTA GAAAAGATAAAGACCGTTAGAGATCACAACAATGAGAAAGCAGATGGTGGTTTAGCACCGTTACCAAGTGAAAGTTTTCATAAATGGAAAGAGGCATGTA TTTGTGCCTTCAAGGTGATGGACAAGGAGATCAAGCTTCAAGAAGGTCTAGACTGCTCTTGCAGTGGAACCACTGCAGTAGTTGTCGTGAGACAGGGTGA AGATCTTATTATAGCTAATCTTGGAGACTCGAGGGCTGTGTTGGGCAGAACCAATGATCAGAAAGGAATCATGCCTGTTCAATTAACTACAGATTTGAAG CCTGGAGTACCAAGTGAAGCAAGAAGAATAAGGCAATGTAATGGCAGAGTACTTGCACTAAAGGAAGAGCCACACGTCCATCGAGTCTGGCTACCACATG AAGATTCTCCAGGCTTAGCCATGTCTCGAGCTTTTGGAGACTTTCTGCTAAAAAACCATGGAATAATTGCATTACCAGACATCTCTTATCACCGAGTAAC TTCCAAGGATCAGTTCATTATCCTCGCATCAGACGGGGTGTGGGATGTGCTTAGCAACAAGGAAGTGGTATCCATCGTTTCGGCGGCAGATAGTGAACAG GCAGCAGCAAAGGCTGTGGTGGAGGCTGCTACAGCTGCGTGGAAAAGGAAGTTTACTTCTTCGAAAGTAGATGATTGCACGGTGGTTTGCCTCTTCCTAC AAACGAGAAAATAG
AA sequence Show only first row Show all	>Potri.006G232700.1 pacid=42767620 polypeptide=Potri.006G232700.1.p locus=Potri.006G232700 ID=Potri.006G232700.1.v4.1 annot-version=v4.1 MGICISSASSEIHQADDGLENVMHVQEDIVSHGIEKRGSLYSKEGSKGVNQDAAVVHQGYGMEHGAFCGVFDGHGKNGHIVSRTVRNRLPSLLLNQKNAL EKIKTVRDHNNEKADGGLAPLPSESFHKWKEACICAFKVMDKEIKLQEGLDCSCSGTTAVVVVRQGEDLIIANLGDSRAVLGRTNDQKGIMPVQLTTDLK PGVPSEARRIRQCNGRVLALKEEPHVHRVWLPHEDSPGLAMSRAFGDFLLKNHGIIALPDISYHRVTSKDQFIILASDGVWDVLSNKEVVSIVSAADSEQ AAAKAVVEAATAAWKRKFTSSKVDDCTVVCLFLQTRK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G26010			Protein phosphatase 2C family ...		Potri.006G232700 [exp]	0	1
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.019G006570 [exp]	2.64	0.7758
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	5.65	0.7532
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Potri.006G204800 [exp]	6.92	0.6400
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.010G223600 [exp]	7.14	0.7286
AT1G05690		BT3	BTB and TAZ domain protein 3 (...		Potri.017G009700 [exp]	10.39	0.6910
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Potri.016G113600 [exp]	11.48	0.7258	AUX1.1
					Potri.001G055675 [exp]	14.00	0.6863
AT2G26270			unknown protein		Potri.006G218800 [exp]	15.23	0.6734
AT1G63930		ROH1	from the Czech 'roh' meaning '...		Potri.001G099700 [exp]	16.24	0.6624
AT2G41370		BOP2	BLADE ON PETIOLE2, Ankyrin rep...		Potri.016G040500 [exp]	18.38	0.6531

Compare expression of checked genes

Potri.006G232700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.